View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_1 (Length: 772)

Name: NF7861_low_1
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_1
NF7861_low_1
[»] chr8 (6 HSPs)
chr8 (15-201)||(17887988-17888174)
chr8 (8-201)||(8358752-8358945)
chr8 (8-137)||(10279621-10279750)
chr8 (408-456)||(20820129-20820177)
chr8 (59-130)||(41527033-41527104)
chr8 (61-102)||(18430876-18430917)
[»] chr2 (5 HSPs)
chr2 (10-201)||(20106611-20106802)
chr2 (34-201)||(31963674-31963841)
chr2 (579-627)||(38062436-38062484)
chr2 (10-137)||(5788821-5788946)
chr2 (408-456)||(38062270-38062315)
[»] chr3 (4 HSPs)
chr3 (8-201)||(20779502-20779695)
chr3 (15-106)||(40416329-40416420)
chr3 (59-137)||(50241485-50241563)
chr3 (15-140)||(37837482-37837607)
[»] chr4 (4 HSPs)
chr4 (15-201)||(13918184-13918370)
chr4 (34-201)||(316444-316611)
chr4 (6-140)||(6559824-6559958)
chr4 (59-137)||(6554546-6554624)
[»] chr6 (2 HSPs)
chr6 (20-201)||(15878783-15878964)
chr6 (63-129)||(9449611-9449677)
[»] chr1 (23 HSPs)
chr1 (262-412)||(13500396-13500546)
chr1 (209-412)||(13605537-13605720)
chr1 (209-412)||(20583415-20583603)
chr1 (579-645)||(13500143-13500209)
chr1 (707-754)||(13500046-13500093)
chr1 (579-630)||(13572497-13572548)
chr1 (6-145)||(49882712-49882851)
chr1 (556-658)||(13411577-13411678)
chr1 (579-653)||(20561180-20561258)
chr1 (582-653)||(20358691-20358766)
chr1 (582-653)||(20552204-20552279)
chr1 (594-678)||(20355277-20355360)
chr1 (594-678)||(20555546-20555629)
chr1 (408-456)||(20583618-20583666)
chr1 (417-456)||(13605474-13605513)
chr1 (452-492)||(13500278-13500318)
chr1 (579-619)||(13605300-13605340)
chr1 (408-456)||(20473189-20473237)
chr1 (408-456)||(20558314-20558362)
chr1 (579-619)||(20583799-20583839)
chr1 (408-456)||(13500336-13500381)
chr1 (710-743)||(13411481-13411514)
chr1 (375-405)||(19144566-19144596)
[»] chr7 (1 HSPs)
chr7 (8-201)||(18290421-18290614)
[»] scaffold0006 (10 HSPs)
scaffold0006 (209-412)||(134194-134377)
scaffold0006 (579-630)||(160013-160065)
scaffold0006 (408-452)||(95101-95145)
scaffold0006 (417-456)||(134131-134170)
scaffold0006 (579-619)||(133957-133997)
scaffold0006 (555-643)||(283804-283892)
scaffold0006 (594-664)||(39757-39827)
scaffold0006 (710-743)||(283700-283733)
scaffold0006 (415-456)||(99563-99605)
scaffold0006 (369-402)||(99644-99677)
[»] scaffold0284 (1 HSPs)
scaffold0284 (6-145)||(7537-7676)
[»] scaffold0592 (2 HSPs)
scaffold0592 (594-678)||(1741-1825)
scaffold0592 (594-678)||(7945-8029)
[»] scaffold0291 (2 HSPs)
scaffold0291 (557-660)||(20358-20461)
scaffold0291 (710-743)||(20527-20560)
[»] chr5 (2 HSPs)
chr5 (59-137)||(9024957-9025035)
chr5 (33-103)||(11572768-11572838)
[»] scaffold0380 (1 HSPs)
scaffold0380 (6-126)||(14527-14647)
[»] scaffold0886 (1 HSPs)
scaffold0886 (594-660)||(448-514)
[»] scaffold0114 (2 HSPs)
scaffold0114 (60-137)||(37045-37122)
scaffold0114 (58-105)||(1405-1452)
[»] scaffold0159 (1 HSPs)
scaffold0159 (10-137)||(33194-33319)
[»] scaffold0406 (1 HSPs)
scaffold0406 (369-402)||(13315-13348)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 17888174 - 17887988
Alignment:
Q  15 gacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgtta 114  Q
    |||| |||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| || |||||||| |||||||||||||| ||||| ||||||    
T  17888174 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgtta 17888075  T
Q  115 actcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| | ||| | |||||| ||||| || ||||||||||||||||    
T  17888074 actcacatttgacacattaacatatcctaatgaataatgtgactatctacgtccataattatgtaacgtagtcaaataaggtcaaaa 17887988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 8358752 - 8358945
Alignment:
Q  8 tgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtat 107  Q
    |||||| |||| ||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||| || |||||||| |||||||||||| | |||||    
T  8358752 tgagattgacaccacatatttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtat 8358851  T
Q  108 gatgttaactcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
     | |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||| ||||| || ||||||||||||||||    
T  8358852 aacgttaactcacatttgacacattaacatatcctaatgaataatgtgactatctgcgtccataattatgtaacgtagtcaaataaggtcaaaa 8358945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 10279750 - 10279621
Alignment:
Q  8 tgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtat 107  Q
    |||||| ||||||||||||||||| ||||||| ||  ||||| | |||| |  |||||||||||||| || || ||||| ||||||| |||  ||||||     
T  10279750 tgagattgacatcacatctttacaaaaaacctgaaggcattagacatttggaccatctcatttatatgttgttgaaaatctactctttcatgtaatgtag 10279651  T
Q  108 gatgttaactcacatttgacacaataacat 137  Q
     | ||||||||||| |||||||| ||||||    
T  10279650 aaggttaactcacacttgacacattaacat 10279621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 20820129 - 20820177
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  20820129 ttaccagctggattatgaatcaacaacggaacaacttgtgctattgatg 20820177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 41527033 - 41527104
Alignment:
Q  59 gtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacaca 130  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||| | ||  || |||||||||| ||||||||    
T  41527033 gtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacaca 41527104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 18430876 - 18430917
Alignment:
Q  61 catctcatttatatattattcaaaatttactcttccatccaa 102  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  18430876 catctcatttatatgttgttgaaaatttactcttccatccaa 18430917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 8e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 20106611 - 20106802
Alignment:
Q  10 agatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatga 109  Q
    |||| |||| ||||| |||||| |||||||||| ||||||| ||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| |    
T  20106611 agattgacaccacatatttacataaaaccttaagacattatgtattttggtcatctcacttatattttattcaaaatctactcttccatccaatgtataa 20106710  T
Q  110 tgttaactcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
     |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||||||  |||| || ||||||||| ||||||    
T  20106711 cgttaactcacatttgacacattaacatatcctaatgaataatgtgactatttgcgtccataattatataacgtagtcaaataagatcaaaa 20106802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 31963674 - 31963841
Alignment:
Q  34 aaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaata 133  Q
    ||||||||| ||||||  ||||| |||||||| | |||||| ||  ||||||| |||||||||||| ||||||| | |||||||| ||||||||||| ||    
T  31963674 aaaccttaagacattaggtattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatgtataaagttaactcgcatttgacacatta 31963773  T
Q  134 acatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
    |||||||||||| |||  || | || | | ||| | |||||| || || |||||||||||||||||||    
T  31963774 acatatcctaatcaattgtgcgtctgtctacgtccataattatgttacgtaatcaaataaggtcaaaa 31963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 579 - 627
Target Start/End: Original strand, 38062436 - 38062484
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaatgaacagag 627  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  38062436 tactactctctattagttgaagaaactccaatatttgaaatgaacagag 38062484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 5788821 - 5788946
Alignment:
Q  10 agatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatga 109  Q
    |||| ||||||||| ||| || ||||| ||||| |||||| ||||    ||||||||| |||||| || ||||| || |||| || ||| |||||| | |    
T  5788821 agattgacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 5788918  T
Q  110 tgttaactcacatttgacacaataacat 137  Q
    | ||||||||||||||||||| ||||||    
T  5788919 ttttaactcacatttgacacattaacat 5788946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 38062270 - 38062315
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  38062270 ttacctgctagattatgaat---caatggaacaactggtgctattgatg 38062315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 20779695 - 20779502
Alignment:
Q  8 tgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtat 107  Q
    |||||| |||| ||||| |||||| ||||||| || ||||||| |||||||||||||||| |||||| || |||||||| |||||||||||||| |||||    
T  20779695 tgagattgacaccacatatttacataaaacctcaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctactcttccatccagtgtat 20779596  T
Q  108 gatgttaactcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
     |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||| ||||| || | ||||||||||||||    
T  20779595 aatgttaactcacatttgacacattaacatatcctaatgaataatgtgactatctgcgtccataattatgtaacgtagttaaataaggtcaaaa 20779502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 40416420 - 40416329
Alignment:
Q  15 gacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgta 106  Q
    ||||||||||||| | | |||| ||||| ||||||  ||| | |||||||||  ||| |||||||||||| |||||| || |||||||||||    
T  40416420 gacatcacatcttcatataaaatcttaagacattaggtatatgggtcatctcgcttaaatattattcaaactttactatttcatccaatgta 40416329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 50241563 - 50241485
Alignment:
Q  59 gtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaataacat 137  Q
    ||||||||| |||||| ||||||| |||||||||||  ||||| | ||  || |||||||||| |||||||| ||||||    
T  50241563 gtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacat 50241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 37837482 - 37837607
Alignment:
Q  15 gacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgtta 114  Q
    ||||||||||||||||  ||||| |||| ||||||  ||| | ||||||||||||||||| ||  |||| || |||| || ||||||| |||| |  |||    
T  37837482 gacatcacatctttactaaaaactttaatacattagttatattggtcatctcatttatatgtttctcaatatctactttttcatccaacgtataagttta 37837581  T
Q  115 actcacatttgacacaataacatatc 140  Q
    | |||||  | ||||| |||||||||    
T  37837582 aatcacacataacacattaacatatc 37837607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 13918370 - 13918184
Alignment:
Q  15 gacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgtta 114  Q
    |||| |||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| || || ||||| |||||||||||||||||||| | ||||    
T  13918370 gacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgtta 13918271  T
Q  115 actcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||| ||||| | ||||||  |||| || ||||||||||||||||    
T  13918270 actcacatttgacacattaacatatcctaatgaattgtgtgactatctgcgtccataattatataacgtagtcaaataaggtcaaaa 13918184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 316611 - 316444
Alignment:
Q  34 aaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaata 133  Q
    ||||||||| ||||||  ||||| |||||||| | |||||| ||  ||||||| ||||||| |||| ||||||| || ||||||| ||||||||||| ||    
T  316611 aaaccttaagacattaggtattttggtcatctgacttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacatta 316512  T
Q  134 acatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
    |||||||||||| |||  || | || | | ||||| |||||| || || |||||||||||||||||||    
T  316511 acatatcctaatcaattgtgcgtctgtctacgttcgtaattatgttacgtaatcaaataaggtcaaaa 316444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 6559958 - 6559824
Alignment:
Q  6 aatgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgt 105  Q
    |||||||| |||| |||| ||| |||  ||||||||| | |||| |||||| |||||||| | |||||| ||  ||||||| |||||||||||| ||| |    
T  6559958 aatgagattgacaccacagcttcacatgaaaccttaagatattagatattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatct 6559859  T
Q  106 atgatgttaactcacatttgacacaataacatatc 140  Q
    || | |||||||| ||||||||||| |||||||||    
T  6559858 ataacgttaactcgcatttgacacattaacatatc 6559824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 6554624 - 6554546
Alignment:
Q  59 gtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaataacat 137  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| | ||  || |||||||||| |||||||| ||||||    
T  6554624 gtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacat 6554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 15878964 - 15878783
Alignment:
Q  20 cacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactca 119  Q
    |||||||||||| |||||||||| ||||||| | |||||||||||||| |||||| || |||||||| |||||||||||||||||||| | |||||||||    
T  15878964 cacatctttacagaaaaccttaagacattatgtgtttcggtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactca 15878865  T
Q  120 catttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
    ||||||||||| ||||||||||||||||||  ||||||||| | ||| | ||||||  |||| || ||||||||||||||||    
T  15878864 catttgacacattaacatatcctaatgaattgtgtgactatctacgtccataattaaataacgtagtcaaataaggtcaaaa 15878783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 9449611 - 9449677
Alignment:
Q  63 tctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacac 129  Q
    ||||| |||||| || |||||||| ||||| |||||||||||||  ||| ||||||||| |||||||    
T  9449611 tctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacac 9449677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 262 - 412
Target Start/End: Complemental strand, 13500546 - 13500396
Alignment:
Q  262 ggacaaaaaatttacgttgttattaagtgacaaacatgaatttcagtttttatcaagtctcttgtcctctaatttgtccattcccataacagttttaaaa 361  Q
    ||||| |||| || |||||| ||| ||| |||||||||||||||||||||||||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  13500546 ggacagaaaagttgcgttgtaattcagtaacaaacatgaatttcagtttttatcaagtctcttatcccataatttgtccactgccataacagttttaaaa 13500447  T
Q  362 tcaaataaaatagattaaattactaaaaagaaagatcattaggcatttacc 412  Q
    | ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  13500446 taaaataaaatagattaaattactacaaagaaagatcattaggcctttacc 13500396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 209 - 412
Target Start/End: Complemental strand, 13605720 - 13605537
Alignment:
Q  209 gaacaacttataaaatgttattatttaagtatattttaaacaacttataattaggacaaaaaatttacgttgttattaagtgacaaacatgaatttcagt 308  Q
    |||||||||||||||||||| ||||||||||| ||   | |||||||||||||||| |||||| || |||||| ||| ||||||||||| |||||| |||    
T  13605720 gaacaacttataaaatgttagtatttaagtatttt---agcaacttataattaggataaaaaaattgcgttgtaatttagtgacaaacaagaattttagt 13605624  T
Q  309 ttttatcaagtctcttgtcctctaatttgtccattcccataacagttttaaaatcaaataaaatagattaaattactaaaaagaaagatcattaggcatt 408  Q
    ||||||||||| ||||||||||                 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||    
T  13605623 ttttatcaagtatcttgtcctc-----------------taacagttttaaaataaaataaaatagattaaattattataaagaaagatcattaggcctt 13605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 209 - 412
Target Start/End: Original strand, 20583415 - 20583603
Alignment:
Q  209 gaacaacttataaaatgttatt----atttaagtatattttaaacaacttataattaggacaaaaaatttacgttgttattaagtgacaaacatgaattt 304  Q
    |||||||||||||||||||| |    |||||||||| ||   | ||||||||||||||||||||||| || |||||| ||| || |||||||| ||||||    
T  20583415 gaacaacttataaaatgttactccgtatttaagtatttt---agcaacttataattaggacaaaaaaattgcgttgtaatttagggacaaacaagaattt 20583511  T
Q  305 cagtttttatcaagtctcttgtcctctaatttgtccattcccataacagttttaaaatcaaataaaatagattaaattactaaaaagaaagatcattagg 404  Q
     |||||||||||||| |||||||||||                ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  20583512 tagtttttatcaagtatcttgtcctct----------------taacagttttaaaataaaataaaatagattaaattattataaagaaagatcattagg 20583595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 579 - 645
Target Start/End: Complemental strand, 13500209 - 13500143
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaat 645  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13500209 tactactctctattagttgaagaaactccaatctttgaaatgaacagagtgagtacaaattaaaaat 13500143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 707 - 754
Target Start/End: Complemental strand, 13500093 - 13500046
Alignment:
Q  707 caataggaatgggaaaatagcaaaaaactgaaagaaatataagagatt 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13500093 caataggaatgggaaaatagcaaaaaactgaaagaaatataagagatt 13500046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 13572548 - 13572497
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaatgaacagagtga 630  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13572548 tactactctctataagttgaagaaactccaatcttttaaatgaacagagtga 13572497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 49882851 - 49882712
Alignment:
Q  6 aatgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgt 105  Q
    |||||||| |||| |||| ||| |||  ||||||||||||||||  ||||| |||||||| |  ||||| ||  ||||||| |||| ||||||||| |||    
T  49882851 aatgagattgacaccacaacttcacatgaaaccttaaaacattaggtattttggtcatctgacatatatgttgctcaaaatctactattccatccattgt 49882752  T
Q  106 atgatgttaactcacatttgacacaataacatatcctaat 145  Q
    || | ||||||||  |||||||||| ||||||||||||||    
T  49882751 ataacgttaactcgtatttgacacattaacatatcctaat 49882712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 658
Target Start/End: Complemental strand, 13411678 - 13411577
Alignment:
Q  556 tttattagtgaaggaaaacaacttactactctctattagttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaata 655  Q
    ||||||||||||||||||||| ||| | |   | | | ||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||||    
T  13411678 tttattagtgaaggaaaacaaattaatgcataccacttgttgaagaaactccaatctttgaaatgaacagagtgataacaaatt-aaaatgcagagaata 13411580  T
Q  656 tat 658  Q
    |||    
T  13411579 tat 13411577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 579 - 653
Target Start/End: Original strand, 20561180 - 20561258
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaatgaaca----gagtgactacaaattaaaaatgcagagaa 653  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||    |||||| ||||||||||||||||||||||    
T  20561180 tactactctttattagttgaagaaactccaatccttgaaatgaacaaagtgagtgagtacaaattaaaaatgcagagaa 20561258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 582 - 653
Target Start/End: Complemental strand, 20358766 - 20358691
Alignment:
Q  582 tactctctattagttgaagaaactccaatcttttaaatgaaca----gagtgactacaaattaaaaatgcagagaa 653  Q
    |||||| ||||||||||||||||||||||| || |||||||||    |||||| ||||||||||||||||||||||    
T  20358766 tactctttattagttgaagaaactccaatccttgaaatgaacaaagtgagtgagtacaaattaaaaatgcagagaa 20358691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 582 - 653
Target Start/End: Original strand, 20552204 - 20552279
Alignment:
Q  582 tactctctattagttgaagaaactccaatcttttaaatgaaca----gagtgactacaaattaaaaatgcagagaa 653  Q
    |||||| ||||||||||||||||||||||| || |||||||||    |||||| ||||||||||||||||||||||    
T  20552204 tactctttattagttgaagaaactccaatccttgaaatgaacaaagtgagtgagtacaaattaaaaatgcagagaa 20552279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 678
Target Start/End: Complemental strand, 20355360 - 20355277
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatatgagaacactttccttcac 678  Q
    ||||||||||||||||| ||| |||||||||||||||  ||||||| ||||||||||||||||| || |||  |||||| |||||    
T  20355360 gttgaagaaactccaatatttgaaatgaacagagtgataacaaatt-aaaatgcagagaatatacataagataactttcgttcac 20355277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 678
Target Start/End: Original strand, 20555546 - 20555629
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatatgagaacactttccttcac 678  Q
    ||||||||||||||||| ||| |||||||||||||||  ||||||| ||||||||||||||||| || |||  |||||| |||||    
T  20555546 gttgaagaaactccaatatttgaaatgaacagagtgataacaaatt-aaaatgcagagaatatacataagataactttcgttcac 20555629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 20583618 - 20583666
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  20583618 ttacctgcaagattatgaatcaacaacggaacaaccggtgctattgatg 20583666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 13605513 - 13605474
Alignment:
Q  417 agattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13605513 agattatgaatcaacaacggaacaactggtgctattgatg 13605474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 13500318 - 13500278
Alignment:
Q  452 tgatgcaaattggtttccaaaaagagatactgaatgatctg 492  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  13500318 tgatgcaaattggtttccaaaaagagaaactgaatgatctg 13500278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 13605340 - 13605300
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaat 619  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  13605340 tactactctctattagttgaagaaactccaatctttgaaat 13605300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 20473237 - 20473189
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  20473237 ttaccagctggattatgaatcaacaacggaacaacttgtgctattgatg 20473189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 20558314 - 20558362
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  20558314 ttaccagctggattatgaatcaacaacggaacaacttgtgctattgatg 20558362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 619
Target Start/End: Original strand, 20583799 - 20583839
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaat 619  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  20583799 tactactctctattagttgaagaaactccaatctttgaaat 20583839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 13500381 - 13500336
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  13500381 ttacctgctagattatgaatcaac---ggaacaactggtgctattgatg 13500336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 13411514 - 13411481
Alignment:
Q  710 taggaatgggaaaatagcaaaaaactgaaagaaa 743  Q
    ||||||||||||||||||||||||||||||||||    
T  13411514 taggaatgggaaaatagcaaaaaactgaaagaaa 13411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 405
Target Start/End: Original strand, 19144566 - 19144596
Alignment:
Q  375 attaaattactaaaaagaaagatcattaggc 405  Q
    |||||||||||||||||||||||||||||||    
T  19144566 attaaattactaaaaagaaagatcattaggc 19144596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 18290421 - 18290614
Alignment:
Q  8 tgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtat 107  Q
    |||||| |||| |||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| || || ||||| |||||||||||||| |||||    
T  18290421 tgagattgacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgtttaaaatctactcttccatccagtgtat 18290520  T
Q  108 gatgttaactcacatttgacacaataacatatcctaatgaatgatgtgactatttgcgttcttaattacgtaacataatcaaataaggtcaaaa 201  Q
       ||||||||||||||| ||||  ||||||||||||| |||  ||||||| | ||||| | |||||| ||||| || ||||||||||||||||    
T  18290521 accgttaactcacatttgtcacatcaacatatcctaatcaattgtgtgactttctgcgtccataattatgtaacgtagtcaaataaggtcaaaa 18290614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 74; Significance: 2e-33; HSPs: 10)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 209 - 412
Target Start/End: Complemental strand, 134377 - 134194
Alignment:
Q  209 gaacaacttataaaatgttattatttaagtatattttaaacaacttataattaggacaaaaaatttacgttgttattaagtgacaaacatgaatttcagt 308  Q
    |||||||||||||||||||| ||||||||||| ||   | |||||||||||||||| |||||| || |||||| ||| ||||||||||| |||||| |||    
T  134377 gaacaacttataaaatgttagtatttaagtatttt---agcaacttataattaggataaaaaaattgcgttgtaatttagtgacaaacaagaattttagt 134281  T
Q  309 ttttatcaagtctcttgtcctctaatttgtccattcccataacagttttaaaatcaaataaaatagattaaattactaaaaagaaagatcattaggcatt 408  Q
    ||||||||||| ||||||||||                 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||    
T  134280 ttttatcaagtatcttgtcctc-----------------taacagttttaaaataaaataaaatagattaaattattataaagaaagatcattaggcctt 134198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 160065 - 160013
Alignment:
Q  579 tactactctct-attagttgaagaaactccaatcttttaaatgaacagagtga 630  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  160065 tactactctcttattagttgaagaaactccaatcttttaaatgaacagagtga 160013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 95145 - 95101
Alignment:
Q  408 ttacctgctagattatgaatcaacaacggaacaactggtgctatt 452  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  95145 ttacctgctagattatgaatcaacaacggaacaacaggtgctatt 95101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 134170 - 134131
Alignment:
Q  417 agattatgaatcaacaacggaacaactggtgctattgatg 456  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  134170 agattatgaatcaacaacggaacaactggtgctattgatg 134131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 133997 - 133957
Alignment:
Q  579 tactactctctattagttgaagaaactccaatcttttaaat 619  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  133997 tactactctctattagttgaagaaactccaatctttgaaat 133957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 643
Target Start/End: Complemental strand, 283892 - 283804
Alignment:
Q  555 ctttattagtgaaggaaaacaacttactactctctattagttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaa 643  Q
    |||||||||||||||||||||| ||| | |   | | | ||||||||||||||||| ||| |||||||||||||||  |||||||||||    
T  283892 ctttattagtgaaggaaaacaaattaatgcataccagttgttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaa 283804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 664
Target Start/End: Complemental strand, 39827 - 39757
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatatgaga 664  Q
    |||||||||||| | |||||| ||||||||||| |||    ||||||||||||||| ||||||||||||||    
T  39827 gttgaagaaacttcgatctttgaaatgaacagactgataggaaattaaaaatgcagcgaatatatatgaga 39757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 283733 - 283700
Alignment:
Q  710 taggaatgggaaaatagcaaaaaactgaaagaaa 743  Q
    ||||||||||||||||||||||||||||||||||    
T  283733 taggaatgggaaaatagcaaaaaactgaaagaaa 283700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 99605 - 99563
Alignment:
Q  415 ctagattatgaatcaacaacgg-aacaactggtgctattgatg 456  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  99605 ctagattatgaatcaacaacggaaacaacttgtgctattgatg 99563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 99677 - 99644
Alignment:
Q  369 aaatagattaaattactaaaaagaaagatcatta 402  Q
    |||||||||||||||| |||||||||||||||||    
T  99677 aaatagattaaattacaaaaaagaaagatcatta 99644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 7537 - 7676
Alignment:
Q  6 aatgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgt 105  Q
    |||||||| |||| |||| ||| |||  ||||||||| ||||||  ||||| |||||||| | |||||| ||  ||||||| ||||||||||||||||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  106 atgatgttaactcacatttgacacaataacatatcctaat 145  Q
    || | |||||||| ||||||||||| ||||||||||||||    
T  7637 ataacgttaactcgcatttgacacattaacatatcctaat 7676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 678
Target Start/End: Complemental strand, 1825 - 1741
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatatgagaacactttccttcac 678  Q
    ||||||||||||||||| ||| |||||||||| ||||  ||||||||| | |||||| |||||||||||||  |||||| |||||    
T  1825 gttgaagaaactccaatatttgaaatgaacagtgtgataacaaattaatagtgcagataatatatatgagataactttcgttcac 1741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 678
Target Start/End: Complemental strand, 8029 - 7945
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatatgagaacactttccttcac 678  Q
    ||||||||||||||||| ||| |||||||||| ||||  ||||||||| | |||||| |||||||||||||  |||||| |||||    
T  8029 gttgaagaaactccaatatttgaaatgaacagtgtgataacaaattaatagtgcagataatatatatgagataactttcgttcac 7945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 660
Target Start/End: Original strand, 20358 - 20461
Alignment:
Q  557 ttattagtgaaggaaaacaacttactactctctattagttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatat 656  Q
    |||||||||||||||||||| ||| | |   | | | ||||||||||||| ||||||| ||||||||||| |||    ||||||||||||||||||||||    
T  20358 ttattagtgaaggaaaacaaattaatgcataccacttgttgaagaaactctaatctttgaaatgaacagactgataggaaattaaaaatgcagagaatat 20457  T
Q  657 atat 660  Q
    ||||    
T  20458 atat 20461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 743
Target Start/End: Original strand, 20527 - 20560
Alignment:
Q  710 taggaatgggaaaatagcaaaaaactgaaagaaa 743  Q
    |||||||| |||||||||||||||||||||||||    
T  20527 taggaatgagaaaatagcaaaaaactgaaagaaa 20560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 9025035 - 9024957
Alignment:
Q  59 gtcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaataacat 137  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||| | ||| || |||||||||| |||||||| ||||||    
T  9025035 gtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacat 9024957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 11572768 - 11572838
Alignment:
Q  33 aaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaat 103  Q
    |||||||||| || |||  ||| | |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  11572768 aaaaccttaagactttaggtatatgggtcatctcacttatatatttttcaaaatttattcttccatccaat 11572838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 14647 - 14527
Alignment:
Q  6 aatgagatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgt 105  Q
    |||||||| ||||||||| ||| || ||||| ||||| |||||| |||| |  |||||||||||||||| || ||||| || |||| || ||| ||||||    
T  14647 aatgagattgacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcattcaatgt 14548  T
Q  106 atgatgttaactcacatttga 126  Q
     | || |||||||||| ||||    
T  14547 gttattttaactcacacttga 14527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 660
Target Start/End: Original strand, 448 - 514
Alignment:
Q  594 gttgaagaaactccaatcttttaaatgaacagagtgactacaaattaaaaatgcagagaatatatat 660  Q
    |||||||||||||| |||||| ||||||||||| |||    ||||||||||||||| ||||||||||    
T  448 gttgaagaaactccgatctttgaaatgaacagactgataggaaattaaaaatgcagcgaatatatat 514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 37122 - 37045
Alignment:
Q  60 tcatctcatttatatattattcaaaatttactcttccatccaatgtatgatgttaactcacatttgacacaataacat 137  Q
    |||||||| |||||| ||||||||||| |||||||| ||||| | ||  || |||||||||| |||||||| ||||||    
T  37122 tcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacat 37045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 1452 - 1405
Alignment:
Q  58 ggtcatctcatttatatattattcaaaatttactcttccatccaatgt 105  Q
    |||||||||| |||||||||||||||||| || |||||||| ||||||    
T  1452 ggtcatctcacttatatattattcaaaatctattcttccattcaatgt 1405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 33194 - 33319
Alignment:
Q  10 agatggacatcacatctttacacaaaaccttaaaacattatatatttcggtcatctcatttatatattattcaaaatttactcttccatccaatgtatga 109  Q
    |||| ||||||||| ||| || ||||| ||||| |||||| ||||    ||||||||| |||||| || ||||| || |||| || ||| |||||| | |    
T  33194 agattgacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 33291  T
Q  110 tgttaactcacatttgacacaataacat 137  Q
    | ||||||||||||||||||| ||||||    
T  33292 ttttaactcacatttgacacattaacat 33319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 13315 - 13348
Alignment:
Q  369 aaatagattaaattactaaaaagaaagatcatta 402  Q
    |||||||||||||||| |||||||||||||||||    
T  13315 aaatagattaaattacaaaaaagaaagatcatta 13348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University