View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_12 (Length: 546)
Name: NF7861_low_12
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 52557252 - 52556940
Alignment:
| Q |
21 |
tgtaacagaattaaaccgctgccggaggtgaagcttattatgaggtgaataatggaaatggatggaagttgtggacatgaaaggaagagaagaagtaacc |
120 |
Q |
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| T |
52557252 |
tgtaacagaattaaaccgctgccggaggtgaagcttattatgaggtgaataatggaaatggatggaagttgtggacatgaaaggaagagaagaagtaacc |
52557153 |
T |
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| Q |
121 |
aaaatctgtggccttgctgagactgagaacaagctgctattattattggttaccannnnnnnnnnnnnnnnnnnnatagccataattccaaaatgatgag |
220 |
Q |
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| T |
52557152 |
aaaatctgtggccttgctgagactgagaacaagctgctattattattggttaccaatgatgatgatgatgatgatatagccataattccaaaatgatgac |
52557053 |
T |
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| Q |
221 |
aatgaatattcatcactctatgttgatgcagcttacctcttcctcacatcctattttataacgaacgtgtggccatggcactgtctctagatcaatttaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52557052 |
aatgaatattcatcactctatgttgatgcagcttaactcttcctcacatcctattttataacgaacgtgtggccatggcactgtctctagatcaatttat |
52556953 |
T |
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| Q |
321 |
ctttttatgtttg |
333 |
Q |
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| T |
52556952 |
ttttttatgtttg |
52556940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 361 - 536
Target Start/End: Complemental strand, 52556888 - 52556712
Alignment:
| Q |
361 |
attgctggatgcttttgtttactactaatattaataaaatgataaaattcgttccatctcatccttgtcttaataaattcaaaagtaatatcatactctt |
460 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52556888 |
attgctggatgcttttgtttactgctaatattaataaaatgataaaattcgttccatctcatccttgtcttaataaattcaaaagtaatataatactctt |
52556789 |
T |
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| Q |
461 |
tgatgatgtggtcaaccatgtaatgtataattgaagnnnnnnnnc-atcatcatgctttcatagaacctagcttcat |
536 |
Q |
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| T |
52556788 |
tgatgatgtggtcaaccatgtaatgtataattgaagaaaaaaaacaatcatcatgctttcatagaaccaagcttcat |
52556712 |
T |
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