View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7861_low_13 (Length: 537)
Name: NF7861_low_13
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 10289724 - 10290155
Alignment:
| Q |
17 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10289724 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
10289823 |
T |
|
| Q |
116 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10289824 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
10289923 |
T |
|
| Q |
216 |
ttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgca |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10289924 |
ttgtggcacaacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcatgaacactgctgca |
10290023 |
T |
|
| Q |
316 |
cacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatata |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290024 |
cacatatgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatata |
10290123 |
T |
|
| Q |
416 |
aaggtcatcatggtcaacaggcaaaaatagta |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
10290124 |
aaggtcatcatggtcaacaggcaaaaatagta |
10290155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 51 - 435
Target Start/End: Complemental strand, 9747748 - 9747370
Alignment:
| Q |
51 |
ttgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattg |
150 |
Q |
| |
|
||||||||| |||||| ||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
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|
| T |
9747748 |
ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattg |
9747650 |
T |
|
| Q |
151 |
ctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagat |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| |||||||| |||||||| ||||||| | ||||| |||| || |
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|
| T |
9747649 |
ctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaactt-gtggcacagcagtatcatctcttgaggacaaat |
9747551 |
T |
|
| Q |
251 |
cgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagt |
350 |
Q |
| |
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| |||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
9747550 |
caggagtt-gatattggacttaaatattcggttcgcctccaaaagtcttcatggacactgctgcacacagatgcaggactaggaggtacctcagtgtagt |
9747452 |
T |
|
| Q |
351 |
tctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
435 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |||||| |
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|
| T |
9747451 |
tctcctaaagagcatatagcagaaaatcaaatgattttttatacaa---ctctgaatgaaatataaaggtcgtcatgggcaacag |
9747370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 10297883 - 10298270
Alignment:
| Q |
19 |
cagaaagagttcgaaaaaatattcacactgcattgaaaaaat-attattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaacca |
117 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||||| | |||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
10297883 |
cagaaagagttcgaaaaaaagttca----gcattgaaaaaaagattattcaccaatataattgcacgggaagtaaaagcataataaaacaacattaaccg |
10297978 |
T |
|
| Q |
118 |
cctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaacttt |
217 |
Q |
| |
|
||||||| ||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
10297979 |
ccttttt-ttgtatcaaaactatggtatgaat--------------acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaactt- |
10298062 |
T |
|
| Q |
218 |
gtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcaca |
317 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || |||| ||||| |||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
10298063 |
gtggcacaacagtatcgtctcttgatgacaaat--------------tggatttaaacattcgattcgcctccagaagtcttcatgaacactgctgcaca |
10298148 |
T |
|
| Q |
318 |
catatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaa |
417 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| | ||| |||||| ||| |
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|
| T |
10298149 |
cat--gctggactaggaggtacctcagtgtagttctccaaaagagcatatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaa |
10298243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 10290210 - 10290293
Alignment:
| Q |
454 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290210 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctc |
10290293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
| Q |
454 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag |
512 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10298467 |
aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag |
10298525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 9747171 - 9747088
Alignment:
| Q |
454 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctc |
537 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || || |||||||||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
9747171 |
aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctc |
9747088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 34694209 - 34694519
Alignment:
| Q |
123 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
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|
| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34694306 |
T |
|
| Q |
223 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
319 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
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|
| T |
34694307 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34694403 |
T |
|
| Q |
320 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
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|
| T |
34694404 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34694502 |
T |
|
| Q |
419 |
gtcatcatggtcaacag |
435 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34694503 |
gtcatcatggtcaacag |
34694519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 34716621 - 34716931
Alignment:
| Q |
123 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34716718 |
T |
|
| Q |
223 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
319 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
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|
| T |
34716719 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34716815 |
T |
|
| Q |
320 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
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|
| T |
34716816 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34716914 |
T |
|
| Q |
419 |
gtcatcatggtcaacag |
435 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34716915 |
gtcatcatggtcaacag |
34716931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 121 - 435
Target Start/End: Complemental strand, 37744192 - 37743885
Alignment:
| Q |
121 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
220 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| |||| ||||| |
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|
| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaac--ttgtg |
37744095 |
T |
|
| Q |
221 |
gcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacat |
320 |
Q |
| |
|
||||||||||||| | || | ||| ||| |||||| |||||| || |||||||||| || ||||| ||||||||||| ||||| ||||||| ||| |
|
|
| T |
37744094 |
gcacaacagtatcatctcggg---acaaatcaggagtt-gatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag |
37743999 |
T |
|
| Q |
321 |
atgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggt |
420 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||| |
|
|
| T |
37743998 |
atgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggt |
37743900 |
T |
|
| Q |
421 |
catcatggtcaacag |
435 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37743899 |
catcatggtcaacag |
37743885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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