View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_15 (Length: 502)
Name: NF7861_low_15
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 53219943 - 53219453
Alignment:
| Q |
1 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagtta-tt |
99 |
Q |
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| T |
53219943 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgatttgttgtcataatttgtcttgactgaacttaatt |
53219844 |
T |
|
| Q |
100 |
tatgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagg |
199 |
Q |
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| T |
53219843 |
tatgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagg |
53219744 |
T |
|
| Q |
200 |
atcgagaaattgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgaattctagattg |
299 |
Q |
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| T |
53219743 |
atcgagaaattgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgtattctagattg |
53219644 |
T |
|
| Q |
300 |
agggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtg |
399 |
Q |
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| T |
53219643 |
agggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtg |
53219544 |
T |
|
| Q |
400 |
aatcatttgcaactacagtcatgtaaaatgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgatgtc |
490 |
Q |
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| T |
53219543 |
aatcatttgcaactacagtcatgtaaaatgttatcatatttgtgcagtagcttttcttttgttgttctgttattttgcactcattgatgtc |
53219453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15412036 - 15411804
Alignment:
| Q |
1 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagttattt |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
15412036 |
tcaggaagagtagggtttataatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttttcataacttgtcttgactaaa---attt |
15411940 |
T |
|
| Q |
101 |
atgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagga |
200 |
Q |
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| T |
15411939 |
atgaattttattaaaagtataactactgtacaggattgttgcaaagcaccattttggagagtgtaggatgcatttggttcaatcgatcagaagcaaagga |
15411840 |
T |
|
| Q |
201 |
tcgagaaattgtggcaagaaagttagtataagtaaa |
236 |
Q |
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| T |
15411839 |
tcgagaaattgtggcaagaaagttagtataagtaaa |
15411804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 229 - 487
Target Start/End: Complemental strand, 15411619 - 15411350
Alignment:
| Q |
229 |
taagtaaaaatattagaaaatatatatctgtttcaaattcctccttac----atgattatgcgaattctagattgagggaacatgtccagggagctgaca |
324 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15411619 |
taagtaaagttattagaaaatatat--ctgtttcaaattcctccttacttacatgattatgcatattctagattgagggaacatgtccagggagctgaca |
15411522 |
T |
|
| Q |
325 |
acaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgta |
424 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
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| T |
15411521 |
ataatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgta |
15411422 |
T |
|
| Q |
425 |
aa---------atgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgat |
487 |
Q |
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|| ||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
15411421 |
aaatgcagtttatgttatcatattagtgcaatagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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