View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_16 (Length: 498)

Name: NF7861_low_16
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_16
NF7861_low_16
[»] chr2 (22 HSPs)
chr2 (16-478)||(8403626-8404088)
chr2 (21-211)||(8429486-8429676)
chr2 (23-127)||(8376193-8376297)
chr2 (167-246)||(8368104-8368183)
chr2 (167-246)||(8401227-8401306)
chr2 (167-246)||(8422804-8422883)
chr2 (181-235)||(8411867-8411921)
chr2 (181-235)||(8433965-8434019)
chr2 (181-233)||(8376087-8376139)
chr2 (23-127)||(8395879-8395983)
chr2 (23-127)||(8405589-8405693)
chr2 (181-233)||(8431018-8431070)
chr2 (52-127)||(8430889-8430964)
chr2 (190-249)||(8459649-8459708)
chr2 (185-234)||(8416952-8417001)
chr2 (23-127)||(8411709-8411813)
chr2 (23-127)||(8433807-8433911)
chr2 (52-127)||(8416822-8416897)
chr2 (181-231)||(8405747-8405797)
chr2 (377-413)||(8368314-8368350)
chr2 (377-413)||(8401060-8401096)
chr2 (377-413)||(8422637-8422673)
[»] chr4 (2 HSPs)
chr4 (53-226)||(55335978-55336151)
chr4 (23-227)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (23-127)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Original strand, 8403626 - 8404088
Alignment:
Q  16 gacatcagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattc 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403626 gacatcagattttgaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattc 8403725  T
Q  116 aaatctttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctc 215  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403726 aaatctttctcttcaataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctc 8403825  T
Q  216 catgctcaaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgatcctatagctgc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8403826 catgctcaaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgaccctatagctgc 8403925  T
Q  316 aattcctgttaacaaaggtccaaaaattgctaaacccttgttaatctttgatgcaatattccctaatctctcataatcctcaatatcttttctcttcacc 415  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 aattcctgttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcacc 8404025  T
Q  416 acttcaattacctcattcatttcatcttccaattccaaattccacccattattgctctcatta 478  Q
    |||||||||||||| |||||||||| |||||| ||||||||||| |||||||| | |||||||    
T  8404026 acttcaattacctccttcatttcattttccaactccaaattccatccattattcccctcatta 8404088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 8429486 - 8429676
Alignment:
Q  21 cagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatc 120  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||    
T  8429486 cagatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatc 8429585  T
Q  121 tttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgt 211  Q
    ||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  8429586 tttatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcataccaacttgt 8429676  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||||||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  123 tctct 127  Q
    |||||    
T  8376197 tctct 8376193  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 8368104 - 8368183
Alignment:
Q  167 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 246  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8368104 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8368183  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 8401306 - 8401227
Alignment:
Q  167 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 246  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8401306 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8401227  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 8422883 - 8422804
Alignment:
Q  167 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 246  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8422883 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8422804  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 8411867 - 8411921
Alignment:
Q  181 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 235  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8411921  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 8433965 - 8434019
Alignment:
Q  181 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 235  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8434019  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8376139 - 8376087
Alignment:
Q  181 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 233  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8376087  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 8395983 - 8395879
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8395983 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8395884  T
Q  123 tctct 127  Q
    |||||    
T  8395883 tctct 8395879  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 8405589 - 8405693
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8405589 gattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8405688  T
Q  123 tctct 127  Q
    |||||    
T  8405689 tctct 8405693  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 8431018 - 8431070
Alignment:
Q  181 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 233  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  52 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 127  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 8459708 - 8459649
Alignment:
Q  190 ctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaaagc 249  Q
    |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||    
T  8459708 ctcaaaaaccataccaacttgccctccatgttctaatgtgttaacaacagttgccaaagc 8459649  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 8416952 - 8417001
Alignment:
Q  185 tacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaac 234  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaac 8417001  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  123 tctct 127  Q
    |||||    
T  8411809 tctct 8411813  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  123 tctct 127  Q
    |||||    
T  8433907 tctct 8433911  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  52 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 127  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 8405747 - 8405797
Alignment:
Q  181 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 231  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 8405797  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 8368314 - 8368350
Alignment:
Q  377 cctaatctctcataatcctcaatatcttttctcttca 413  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8368314 cctaatctctcataatcttccatatcttttctcttca 8368350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 8401096 - 8401060
Alignment:
Q  377 cctaatctctcataatcctcaatatcttttctcttca 413  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8401096 cctaatctctcataatcttccatatcttttctcttca 8401060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 8422673 - 8422637
Alignment:
Q  377 cctaatctctcataatcctcaatatcttttctcttca 413  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8422673 cctaatctctcataatcttccatatcttttctcttca 8422637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 55335978 - 55336151
Alignment:
Q  53 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 152  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  153 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 226  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 55330516 - 55330720
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||| |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  123 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 222  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttc 55330715  T
Q  223 aaaag 227  Q
    |||||    
T  55330716 aaaag 55330720  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  23 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 122  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  129 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 30  T
Q  123 tctct 127  Q
    |||||    
T  29 tctct 25  T

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