View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_17 (Length: 479)

Name: NF7861_low_17
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_17
NF7861_low_17
[»] chr5 (16 HSPs)
chr5 (1-467)||(43312380-43312846)
chr5 (117-242)||(39486411-39486536)
chr5 (118-221)||(39454592-39454695)
chr5 (115-239)||(39480323-39480447)
chr5 (117-227)||(39450952-39451062)
chr5 (115-249)||(39458379-39458513)
chr5 (118-242)||(39464626-39464750)
chr5 (117-227)||(39475458-39475568)
chr5 (427-467)||(39483546-39483586)
chr5 (427-465)||(39486754-39486792)
chr5 (117-221)||(39471988-39472092)
chr5 (421-461)||(39475789-39475829)
chr5 (424-467)||(39458140-39458183)
chr5 (428-467)||(39464401-39464440)
chr5 (431-465)||(39451293-39451327)
chr5 (117-221)||(39460202-39460306)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 43312846 - 43312380
Alignment:
Q  1 ttcatttcacaccagcaaagccatgacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  43312846 ttcatttcacaccagcaaagccatgacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttt 43312747  T
Q  101 nnnagttgttgtttaggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgt 200  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43312746 tttagttgttgtttaggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcat 43312647  T
Q  201 caaccgtgataaccgtctccgtgtaaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312646 caaccgtgataaccgtctccgtgtaaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtc 43312547  T
Q  301 attaacctccctgaaactactcatgttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctg 400  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312546 attaacctccctgaaaccactcatgttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctg 43312447  T
Q  401 tttcaaatatcactggaaagctcgctgccttcgttgttgacatgttctgcaccaccatgattgatgt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312446 tttcaaatatcactggaaagctcgctgccttcgttgttgacatgttctgcaccaccatgattgatgt 43312380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
Q  117 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 216  Q
    ||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| ||||||||  |||||||||||||||||    
T  39486411 gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt 39486510  T
Q  217 ctccgtgtaaccgtcttggtcatcaa 242  Q
    |||||  ||||| |||||||||||||    
T  39486511 ctccgaataaccatcttggtcatcaa 39486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
Q  118 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 217  Q
    |||||||||  |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||||  ||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  218 tccg 221  Q
    ||||    
T  39454692 tccg 39454695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
Q  115 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 214  Q
    ||||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || ||||||||  |||||||||||||||    
T  39480323 aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 39480422  T
Q  215 gtctccgtgtaaccgtcttggtcat 239  Q
    |||||||  |||| || ||||||||    
T  39480423 gtctccgaataactgttttggtcat 39480447  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
Q  117 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 216  Q
    ||||||||||  |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || ||||||||  |||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  217 ctccgtgtaac 227  Q
    ||||| |||||    
T  39451052 ctccgagtaac 39451062  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
Q  115 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 214  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| ||||||||  |||||||||||||||    
T  39458513 aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc 39458414  T
Q  215 gtctccgtgtaaccgtcttggtcatcaagtttcca 249  Q
    |||||||  ||||  |||||||||| || ||||||    
T  39458413 gtctccgaataactatcttggtcatgaaatttcca 39458379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
Q  118 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 217  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| ||||||||  ||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  218 tccgtgtaaccgtcttggtcatcaa 242  Q
    ||||  ||||| |||| ||||||||    
T  39464650 tccgaataaccatcttagtcatcaa 39464626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
Q  117 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 216  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  ||||||||  |||| ||||||||||||    
T  39475458 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 39475557  T
Q  217 ctccgtgtaac 227  Q
    ||||| |||||    
T  39475558 ctccgagtaac 39475568  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 39483546 - 39483586
Alignment:
Q  427 gccttcgttgttgacatgttctgcaccaccatgattgatgt 467  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39483546 gccttcgttgttgacatgttctgcaccaccatgattgatgt 39483586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 39486754 - 39486792
Alignment:
Q  427 gccttcgttgttgacatgttctgcaccaccatgattgat 465  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39486754 gccttcgttgttgacatgttctgcaccaccatgattgat 39486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
Q  117 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 216  Q
    ||||||||||  ||||||||||||| |||||| ||| | || ||| ||| |||| ||  | || |||||||| ||||||||  |||||||||||||||||    
T  39471988 gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt 39472087  T
Q  217 ctccg 221  Q
    |||||    
T  39472088 ctccg 39472092  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 39475789 - 39475829
Alignment:
Q  421 ctcgctgccttcgttgttgacatgttctgcaccaccatgat 461  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39475789 ctcgccgccttcgttgttgacatgttctgcaccaccatgat 39475829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 424 - 467
Target Start/End: Complemental strand, 39458183 - 39458140
Alignment:
Q  424 gctgccttcgttgttgacatgttctgcaccaccatgattgatgt 467  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  39458183 gctgcattcattgttgacatgttctgcaccaccatgattgatgt 39458140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 39464440 - 39464401
Alignment:
Q  428 ccttcgttgttgacatgttctgcaccaccatgattgatgt 467  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgattgatgt 39464401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 465
Target Start/End: Original strand, 39451293 - 39451327
Alignment:
Q  431 tcgttgttgacatgttctgcaccaccatgattgat 465  Q
    |||||||||||||||||||||||||||||||||||    
T  39451293 tcgttgttgacatgttctgcaccaccatgattgat 39451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 39460202 - 39460306
Alignment:
Q  117 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 216  Q
    ||||||||||  |||||| ||||||||||||| ||| |||  | | ||| |||  |||||||||||||| || ||||||||   |||||||||||| ||     
T  39460202 gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgc 39460301  T
Q  217 ctccg 221  Q
    |||||    
T  39460302 ctccg 39460306  T

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