View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_19 (Length: 455)
Name: NF7861_low_19
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Original strand, 49598229 - 49598651
Alignment:
| Q |
15 |
tggtgttactcaaatgcagatcatacaggtatttgaagtaggtgagaaacaatagcacttaacctcttcataccataactaagtaatcctattcctatca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49598229 |
tggtgttactcaaatgcagatcatacaggtatttgaagtaggtgagaaacaatagcacttaacctcttcataccataactaagtaatcctattcctatca |
49598328 |
T |
|
| Q |
115 |
tctgatacacttagttgtggtgcaaagaatacacatgtttataagctcacactatataactaattggtctaaatatttttcctatgtaaatcaatcataa |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49598329 |
tctgatacacttagttgtggtgcaaagaatacacacgtttataagctcacactatataactaattggtctaaatatttttcctatgtaaatcaatcataa |
49598428 |
T |
|
| Q |
215 |
ttatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatatatgatttgttcatgcttgtttaaagggtacaactttttacgct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49598429 |
ttatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatatatgatttgttcatgcttgtttaaagggtacaactttttacgct |
49598528 |
T |
|
| Q |
315 |
aacaaacaatatgtcaagattaaactcaacaaattaggctaaaaatagaaaattcaaaaggcttacacttagtttgcggcgtccagttttcaatgctcta |
414 |
Q |
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| T |
49598529 |
aacaaacaatatgtcaagattaaactcaacaaattaggctaaaaatagaaaattcaaaaggcttacacttagtttgcggcgtccagttttcaatgctcta |
49598628 |
T |
|
| Q |
415 |
gccaacatattcaattgccaagt |
437 |
Q |
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| T |
49598629 |
gccaacatatttaattgccaagt |
49598651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 31188870 - 31188943
Alignment:
| Q |
203 |
aatcaatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatatatgat |
276 |
Q |
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|
| T |
31188870 |
aatcaatcataattgtcagatcattacaaatgtttaacttcaatcataattacttcgaaagtcacacatatgat |
31188943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 30011826 - 30011752
Alignment:
| Q |
203 |
aatcaatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatatatgatt |
277 |
Q |
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| T |
30011826 |
aatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaaatcacacatatgatt |
30011752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 16215397 - 16215463
Alignment:
| Q |
207 |
aatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatatat |
273 |
Q |
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|||||||||| ||||||||||||||| ||| |||| |||||||||||||| |||||| | |||||| |
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| T |
16215397 |
aatcataattgacagattattaaaaatgtttgacttgaatcgtaactacttctaaagttatatatat |
16215463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 49364397 - 49364458
Alignment:
| Q |
204 |
atcaatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtc |
265 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||||||| || || ||||||| |
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| T |
49364397 |
atcaatcataattatcagattattaaaaaggtttgactttaatcgtaattatttctaaagtc |
49364458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 2377944 - 2377876
Alignment:
| Q |
203 |
aatcaatcataattatcagattattaaaaatctttaacttcaatcgtaactacttttaaagtcacatat |
271 |
Q |
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||||||||||||| | |||| ||||||||| |||| || ||| ||||||||||||||||||||||| |
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| T |
2377944 |
aatcaatcataatcgtgagatcattaaaaatatttagttttcatcctaactacttttaaagtcacatat |
2377876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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