View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_20 (Length: 444)

Name: NF7861_low_20
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_20
NF7861_low_20
[»] chr5 (1 HSPs)
chr5 (7-431)||(39252497-39252911)
[»] chr1 (3 HSPs)
chr1 (285-338)||(35201495-35201548)
chr1 (285-338)||(35202375-35202428)
chr1 (285-333)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (282-336)||(47007765-47007819)
chr3 (285-336)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (283-327)||(29308399-29308443)
chr2 (283-327)||(29309102-29309146)
chr2 (283-338)||(4161336-4161390)
chr2 (283-327)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (285-338)||(33520893-33520946)
chr8 (285-327)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (283-338)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (285-327)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 39252911 - 39252497
Alignment:
Q  7 gagatggacatcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcctataactcctctggtaaactctggtaaatatgaacatgcttctgcc 106  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39252911 gagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcccataactcctctggtaaactctggtaaatatgaacatgcttctgcc 39252812  T
Q  107 atcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252811 atcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcac 39252712  T
Q  207 tcactttcattatatagacgcccctaaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccatttagg 306  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39252711 tcactttcattata----------taaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccattttgg 39252622  T
Q  307 gaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaataataatactcc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39252621 gaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaatagtaatactcc 39252522  T
Q  407 ctcataatctgactttcacgtgatg 431  Q
    |||||||||||||||||||||||||    
T  39252521 ctcataatctgactttcacgtgatg 39252497  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 35201495 - 35201548
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 338  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  35201495 gtgcagatcctctccatttggggagtaaatggccatctcaatttcctttcataa 35201548  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 35202428 - 35202375
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 338  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  35202428 gtgcagatcctctccatttggtgaggaaatggccatctcaatttcctttcataa 35202375  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 37643891 - 37643843
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaattaccttt 333  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  37643891 gtgcatatcctctccatttagggagaaaatgacaatctcaatttccttt 37643843  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 47007819 - 47007765
Alignment:
Q  282 tgagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 336  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007819 tgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007765  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 47007023 - 47007074
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 336  Q
    |||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007023 gtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007074  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 29308443 - 29308399
Alignment:
Q  283 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 327  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29308399  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 29309102 - 29309146
Alignment:
Q  283 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 327  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29309102 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29309146  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 4161390 - 4161336
Alignment:
Q  283 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 338  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
T  4161390 gagtgcagatcctctccatttgggga-gaaattgcaatctcaatttcctttcataa 4161336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 29283954 - 29283910
Alignment:
Q  283 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 327  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  29283954 gagtgtagatcctctccatttagggaggaaattgcaatctaaatt 29283910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 33520946 - 33520893
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 338  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  33520946 gtgcagatcctctccatttggtgaggaaatggccatcacaatttcctttaataa 33520893  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 33520216 - 33520258
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaatt 327  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  33520216 gtgcagatcctctccattttatgaggaaatggccatctcaatt 33520258  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 4275070 - 4275125
Alignment:
Q  283 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 338  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataa 4275125  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 1625 - 1667
Alignment:
Q  285 gtgcagatcctctccatttagggaggaaatggccatctcaatt 327  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  1625 gtgcagatcctctccattttatgaggaaatggccatctcaatt 1667  T

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