View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_21 (Length: 428)
Name: NF7861_low_21
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 43994515 - 43994872
Alignment:
| Q |
18 |
ttaacaccgaaatgttgaccaaaggggtattccggtgtcagtgttggtgtcctgcaccgaccgaattatgtcattgtctcaaaattttattggtgtcgac |
117 |
Q |
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| T |
43994515 |
ttaacaccgaaatgatgaccaaaggggtattccggtgtcagtgttggtgtcctgcaccgaccgaattatgtcattgtctcaaaatgttattggtgtcgac |
43994614 |
T |
|
| Q |
118 |
tgtgagtgtttgtgtcgtgtccgtgtctgttctctttagcttatatatagcaagtttgtgtgttttggtggtggcttatttaaagatttttatgtaaagg |
217 |
Q |
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| T |
43994615 |
tgtgagtgtttgtgtcgtgtccgtgtctgttctctttagcttatatatagcaagtttgtgtgttttggtggtggcttatttaaagatttttatgtaaagg |
43994714 |
T |
|
| Q |
218 |
agtaatgatatgctgctgccttaatgtatttaggagtactgcaaggttggtattggtagagttagtgttttgtgtgttaacctgttttggattggttgta |
317 |
Q |
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| T |
43994715 |
agtaatgatatgctgctgccttaatgtatttaggagtactgcaaggttggtattggtagagttagtgttttgtgtgttaacctgttttggattggttgta |
43994814 |
T |
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| Q |
318 |
acttgtaacattcactaatacaccttttaattttgagtcattcagtaatggttaggcatg |
377 |
Q |
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| T |
43994815 |
acttgtaacattcactaatacaccttttaa--ttgagtcattcagtaatggttaggcatg |
43994872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 18223819 - 18224065
Alignment:
| Q |
80 |
gaattatgtcattgtctcaaaattttattggtgtcgactgtgagtgtttgtgtcgtgtccgtgtctgttctctttagcttatatatagcaagtttgtgtg |
179 |
Q |
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| T |
18223819 |
gaatcatgtcattgtctaaaaattt-ataggtgttgactgtgaatgtttgtgtcgtgtccgtgtctgtactttttactttatatatagatagattgtgtg |
18223917 |
T |
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| Q |
180 |
ttttggtggtggcttatttaaagatttttatgtaaaggagtaatgatatgctgctgccttaatgtatttaggagtactgcaaggttggtattggtagagt |
279 |
Q |
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|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||| |||||||| | ||||||| ||||||| || |
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| T |
18223918 |
ttttggcggtggtttatttaa---------------ggagtaattatatgctgctgccttaatgtatttgggagtactaaatggttggt-ttggtagtgt |
18224001 |
T |
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| Q |
280 |
tagtgttttgtgtgttaacctgttttggattggttgtaacttgtaacattcactaatacacctt |
343 |
Q |
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| T |
18224002 |
tattgttttgtatgtttacctgttttggattggttgtaacttgtagcattcactaatagacctt |
18224065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 42192310 - 42192282
Alignment:
| Q |
80 |
gaattatgtcattgtctcaaaattttatt |
108 |
Q |
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| T |
42192310 |
gaattatgtcattgtctcaaaattttatt |
42192282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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