View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_27 (Length: 375)
Name: NF7861_low_27
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_27 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 42280321 - 42279986
Alignment:
| Q |
18 |
ttctaattattaggtcaatattcattactgtaataaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattct |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42280321 |
ttctaattattaggtcaatattcattactgtaa---atcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattct |
42280225 |
T |
|
| Q |
118 |
gagattatttcagaataaggaagcatgtggaagtaattgacaactgcaagaacttcttttgaccaaaggaccctgaaagctatacaaagatgagatatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42280224 |
gagattatttcagaataaggaagcatgtggaagtaattgacaactgcaagaacttcttttgaccaaaggaccccgaaagctatacaaagatgagatatca |
42280125 |
T |
|
| Q |
218 |
aatgttatagagaaacacacaaaaagtttgttatagaaaggccatatcgattgtaacaaacctttcaattaaatctttgataggaactttagtaaaccct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42280124 |
aatgttatagagaaacacacaaaaagtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgataggaactttagtaaaccct |
42280025 |
T |
|
| Q |
318 |
tcaacaatcgactgtgagcacttcattatataaaagcga |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42280024 |
tcaacaatcgactgtgagcacttcattatataaaagcga |
42279986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 42254178 - 42253824
Alignment:
| Q |
18 |
ttctaattattaggtcaatattcattactgtaataaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattct |
117 |
Q |
| |
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|||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
42254178 |
ttctaattgtgaggtcaatattcattactgtaa---atcaatatgaatttagcatcagaaaatgggaaatgtgaattataccaacctagaaatccattct |
42254082 |
T |
|
| Q |
118 |
gagattatttcagaataaggaagcatgtggaagtaattgacaactg-----------------caagaacttcttttgaccaaaggaccctgaaagctat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
42254081 |
gagattatttcagaataaggaagcatgtggaagtacttgacaactggggtggtcttccaactgctagaacttcttttgaccaaaggacctcgaaagctat |
42253982 |
T |
|
| Q |
201 |
acaaagatgagatatcaaatgttatagagaaacacacaaaaagtttgttatagaaaggccatatcgattgtaacaaacctttcaattaaatctttgatag |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
42253981 |
acaaagatgagatatcaaatgttatagagaaacacacaaaaattttgttatagaaaagccatattgattgtaacgaacctttcaattaaatctttgatag |
42253882 |
T |
|
| Q |
301 |
gaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
358 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42253881 |
gaactttagtaaacccttcaacgatcgactgtgagcacttcattatataaaagcgaga |
42253824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 42268311 - 42267961
Alignment:
| Q |
22 |
aattattaggtcaatattcattactgtaataaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattctgaga |
121 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42268311 |
aattatgaggtcaatattcattact---ataaatcaatctaaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattctgaga |
42268215 |
T |
|
| Q |
122 |
ttatttcagaataaggaagcatgtggaagtaattgacaactgc-----------------aagaacttcttttgaccaaaggaccctgaaagctatacaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
42268214 |
ttatttcagaataaggaagcatgtggaagtaattgacaactgcggtggccttccaactgcaagaacttcttttgaccaaaggaccccgaaagctatacaa |
42268115 |
T |
|
| Q |
205 |
agatgagatatcaaatgttatagagaaacacacaaaaagtttgttatagaaaggccatatcgattgtaacaaacctttcaattaaatctttgataggaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
42268114 |
agatgagatatcaaatgttatagagaaacacacaaaaagtttgtcatagaaaagcgatatcgattgtagcgaacctttcaattaaatctttgataggaac |
42268015 |
T |
|
| Q |
305 |
tttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
358 |
Q |
| |
|
|| ||||||||||||| | || |||||||||| ||||||||||||||||||||| |
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|
| T |
42268014 |
ttgagtaaacccttcatcgatggactgtgagcccttcattatataaaagcgaga |
42267961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 42259771 - 42259419
Alignment:
| Q |
18 |
ttctaattattaggtcaatattcattactgtaataaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| || ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
42259771 |
ttctaattatgaggtcaatattcattactgtaa---atccatatgaatttagcatcggaaaataggaaatgtgaattataccaacctagaaatccattca |
42259675 |
T |
|
| Q |
118 |
gagattatttcagaataaggaagcatgtggaagtaattgacaa-----------------ctgcaagaacttcttttgaccaaaggaccctgaaagctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
42259674 |
gagattatttcagaataaggaagcatctggaagtacttgacaagggaggtggtcttccaactgctagaacttcttttgaccaaaggaccccaaaagctat |
42259575 |
T |
|
| Q |
201 |
acaaagatgagatatcaaatgttatagagaaacacacaaaaagtttgttatagaaaggccatatcgattgtaacaaacctttcaattaaatctttgatag |
300 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42259574 |
acaaagaagagatatcaaatgttgtagagaaagacacaaa--gtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgatag |
42259477 |
T |
|
| Q |
301 |
gaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42259476 |
gaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
42259419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 42307706 - 42307608
Alignment:
| Q |
267 |
attgtaacaaacctttcaattaaatctttgataggaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgagatgatgtc |
365 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
42307706 |
attgtaacgaacctttcaattaaatctttgataggaacttgagtaaacccttcatcgatcgactgtgagcacttcattatataaaagcgtgaagatgtc |
42307608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 42308195 - 42308083
Alignment:
| Q |
51 |
taaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattctgagattatttcagaataaggaagcatgtggaag |
150 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42308195 |
taaatcaatctaaattgggcatcagaaaaagggaaaggagaattataccaacctagaaatccattctgagattattttggaataaggaagcatgtggaag |
42308096 |
T |
|
| Q |
151 |
taattgacaactg |
163 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
42308095 |
tactcgacaactg |
42308083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 42312477 - 42312393
Alignment:
| Q |
271 |
taacaaacctttcaattaaatctttgataggaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcg |
355 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | || |||| ||| | ||||||||||||||||||||||||||||||| |
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|
| T |
42312477 |
taacgaacctttcaattaaatctttgataggaacttgaatagacccatcagctgtcgactgtgagcacttcattatataaaagcg |
42312393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 42313389 - 42313307
Alignment:
| Q |
69 |
gcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattctgagattatttcagaataaggaagcatgtggaagta |
152 |
Q |
| |
|
||||||||||| |||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
42313389 |
gcatcagaaaa-gggaaaggtgaattacaccaacctagaaatccagtctgagattatttcggaataaggaagcacgtggaagta |
42313307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 42308063 - 42307998
Alignment:
| Q |
166 |
agaacttcttttgaccaaaggaccctgaaagctatacaaagatgagatatcaaatgttatagagaa |
231 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||||||||||| |||||| |||||||| |
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|
| T |
42308063 |
agaacttcttttgaccaaaggaccccggacgctatccaaagatgagatataaaatgtcatagagaa |
42307998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 488606 - 488254
Alignment:
| Q |
18 |
ttctaattattaggtcaatattcattactgtaataaatcaatctgaatttagcatcagaaaatgggaaatgtgaattatacaaacctagaaatccattct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| || ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
488606 |
ttctaattatgaggtcaatattcattactgtaa---atccatatgaatttagcatcggaaaataggaaatgtgaattataccaacctagaaatccattca |
488510 |
T |
|
| Q |
118 |
gagattatttcagaataaggaagcatgtggaagtaattgacaa-----------------ctgcaagaacttcttttgaccaaaggaccctgaaagctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
488509 |
gagattatttcagaataaggaagcatctggaagtacttgacaagggaggtggtcttccaactgctagaacttcttttgaccaaaggaccccaaaagctat |
488410 |
T |
|
| Q |
201 |
acaaagatgagatatcaaatgttatagagaaacacacaaaaagtttgttatagaaaggccatatcgattgtaacaaacctttcaattaaatctttgatag |
300 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
488409 |
acaaagaagagatatcaaatgttgtagagaaagacacaaa--gtttgttatagaaaagccatatcgattgtaacaaacctttcaattaaatctttgatag |
488312 |
T |
|
| Q |
301 |
gaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
488311 |
gaactttagtaaacccttcaacaatcgactgtgagcacttcattatataaaagcgaga |
488254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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