View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7861_low_29 (Length: 370)
Name: NF7861_low_29
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 41 - 323
Target Start/End: Complemental strand, 9352807 - 9352526
Alignment:
| Q |
41 |
acacaagaaaattatattgtcaaaatataaaaaatgtccacaggaaaactccactcgtgcacaacacacgttcctaatctagatgcctactaatttgcac |
140 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352807 |
acacaagaaaattctattgtcaaaataaaaaaaatgtccataggaaaactccactcgtgcaca-cacacgttcctaatctagatgcctactaatttgcac |
9352709 |
T |
|
| Q |
141 |
atacacgtcacttcaattattgtacactttttctatattttaagaccttgaagttggaaaccaacttggttaaaaaatcagatgttttggcctgcagctc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9352708 |
atacacgtcacttcaattattgtacactttttctatattttcagaccttgaagatggaaaccaactttgttaaaaaatcagatgttttggcctgcagctc |
9352609 |
T |
|
| Q |
241 |
cttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataattgaaataatgagggtaatgtgg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
9352608 |
cttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataattgaaattatgagagttatgtgg |
9352526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 9306297 - 9306051
Alignment:
| Q |
32 |
atgaatagtacacaagaaaattatattgtcaaaatataaaaaa----tgtccacaggaaaactccactcgtgcacaacacacgttcctaatctagatgcc |
127 |
Q |
| |
|
|||||||| ||||||| || || ||||||||||||| |||||| ||||||||| |||||| |||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
9306297 |
atgaatagcacacaagcaagttctattgtcaaaataaaaaaaaataatgtccacagcaaaacttcactcgtgcaca-cacacgttccaaatctagaggcc |
9306199 |
T |
|
| Q |
128 |
tactaatttgcacatacacgtcacttcaattattgtacactttttctatattttaagaccttgaagttggaaaccaacttggttaaaaaatcagatgttt |
227 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9306198 |
tactaatttgcacatacacgtaacttcaattattgtacactttt-ctatattttaagaccttgaagttggaaaccaactttgttaaaaaatcagatgttt |
9306100 |
T |
|
| Q |
228 |
tggcctgcagctccttcatattgagacaacctactgcacaaatctcaga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9306099 |
tggcctgcagctccttcatattgagacaacctactgcacagatctcaga |
9306051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 9332926 - 9332813
Alignment:
| Q |
212 |
aaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctc--agaactatgcagcaccagtttttataattgaaataa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| | |||||||||||||||| | |
|
|
| T |
9332926 |
aaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctcagagaaatatgcaccactaatttttataattgaaatga |
9332827 |
T |
|
| Q |
310 |
tgagggtaatgtgg |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9332826 |
tgagggtaatgtgg |
9332813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 9302510 - 9302388
Alignment:
| Q |
201 |
ccaacttggttaaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataa |
300 |
Q |
| |
|
||||| ||| ||||||| |||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||| |
|
|
| T |
9302510 |
ccaacgtggataaaaaaatagatgtggtagcctgcagctccttcatattgagacaatctactgcaccaatctcagaaatttgcagcaccaatttttataa |
9302411 |
T |
|
| Q |
301 |
ttgaaataatgagggtaatgtgg |
323 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
9302410 |
ttgaaacgatgagggtaatgtgg |
9302388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 9302712 - 9302592
Alignment:
| Q |
23 |
aaaggaaacatgaatagtacacaagaaaattatattgtcaaaatataaaaaat--------gtccacaggaaaactccactcgtgcacaacacacgttcc |
114 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| || ||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
9302712 |
aaaggaaacatgaatagcacacaaacaaattttattgtcaaaataaaaaaaataaaaaaatgtacacagaaaaattccactcgtgcaca-cacacgttcc |
9302614 |
T |
|
| Q |
115 |
taatctagatgcctactaattt |
136 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
9302613 |
taatttaaatgcctactaattt |
9302592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 9305972 - 9305934
Alignment:
| Q |
316 |
taatgtggttttctaactgaaaacatgccagctatattc |
354 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9305972 |
taatgaggttttctaactgaaaacatgccagctatattc |
9305934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 9352497 - 9352459
Alignment:
| Q |
316 |
taatgtggttttctaactgaaaacatgccagctatattc |
354 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9352497 |
taatgaggttttctaactgaaaacatgccagctatattc |
9352459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University