View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_30 (Length: 347)

Name: NF7861_low_30
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_30
NF7861_low_30
[»] chr5 (11 HSPs)
chr5 (16-333)||(39464571-39464888)
chr5 (78-333)||(39470794-39471049)
chr5 (140-323)||(39471975-39472158)
chr5 (140-287)||(39450939-39451086)
chr5 (154-296)||(39486412-39486554)
chr5 (88-317)||(39460140-39460366)
chr5 (154-287)||(39475459-39475592)
chr5 (154-318)||(39458346-39458510)
chr5 (154-263)||(39454592-39454701)
chr5 (154-263)||(39480326-39480435)
chr5 (154-278)||(43312605-43312729)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 39464888 - 39464571
Alignment:
Q  16 gacatcactcacaaagattcctcttattatgatactgtttcatccattcctgttcctatatcaaaaaacagatatatcaaacaacaattcagaaaaacat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464888 gacatcactcacaaagattcctcttattatgatactgtttcatctattcctgttcctatatcaaaaaacagatatatcaaacaacaattcagaaaaacat 39464789  T
Q  116 taactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgccct 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464788 caactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgccct 39464689  T
Q  216 tgagtttgcgaagcttctaatcaaccgtgataaccgtctccgagtaaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464688 tgagtttgcgaagcttctaatcaaccgtgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaa 39464589  T
Q  316 tccattcccatatctgat 333  Q
    ||||||||||||||||||    
T  39464588 tccattcccatatctgat 39464571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 39471049 - 39470794
Alignment:
Q  78 aaaaaacagatatatcaaacaacaattcagaaaaacattaactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgttt 177  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||| || ||||||||| ||||| |||||| ||| ||||||||||  ||||| ||||||    
T  39471049 aaaaaacaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagaaagtggaagtggtgttt 39470950  T
Q  178 atcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtctccgagtaaccatcttagtcatca 277  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||| ||||||||| ||| || ||||  |||||||||| |    
T  39470949 atcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcctctgaataactgtcttagtcatga 39470850  T
Q  278 aactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgat 333  Q
    || ||||||| || |||||||| ||||||||| |||||||||||||||| ||||||    
T  39470849 aattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgat 39470794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 323
Target Start/End: Original strand, 39471975 - 39472158
Alignment:
Q  140 tcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaa 239  Q
    ||||||||| ||| ||||||||||||||||| |||||| |||||||||| ||||  |||||| |||||||||| || |||||||||||||||||||||||    
T  39471975 tcctgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaa 39472074  T
Q  240 ccgtgataaccgtctccgagtaaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcc 323  Q
    ||||||||||||||||||| ||||  | ||||| |||||| ||||||| | | ||||| |||||||||||||||||||| ||||    
T  39472075 ccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcc 39472158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 39450939 - 39451086
Alignment:
Q  140 tcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaa 239  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||  | |||||||||||  ||||||| || |||||||||||||||||    
T  39450939 tcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaa 39451038  T
Q  240 ccgtgataaccgtctccgagtaaccatcttagtcatcaaactcccaca 287  Q
     |||||||||||||||||||||||  | ||||| |||||| |||||||    
T  39451039 tcgtgataaccgtctccgagtaactgttttagttatcaaattcccaca 39451086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 154 - 296
Target Start/End: Original strand, 39486412 - 39486554
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    ||||||||||||||||| ||| |||||||||  || | ||| ||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||    
T  39486412 atgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgtc 39486511  T
Q  254 tccgagtaaccatcttagtcatcaaactcccacaaaccgcaga 296  Q
    ||||| |||||||||| ||||||||| ||||||| ||| ||||    
T  39486512 tccgaataaccatcttggtcatcaaattcccacacaccacaga 39486554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 317
Target Start/End: Original strand, 39460140 - 39460366
Alignment:
Q  88 tatatcaaacaacaattcagaaaaacattaactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttc 187  Q
    ||||||||| ||||||||| ||||||| ||||| | |  ||||||| | || ||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  39460140 tatatcaaagaacaattca-aaaaacagtaacttaca--gagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttc 39460236  T
Q  188 ccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtctccgagtaaccatcttagtcatcaaactcccaca 287  Q
    ||| |    | ||||||| |||  |||||||||| || |||||||||| |||||||||||| || |||||| | ||  || ||||||| ||||||||| |    
T  39460237 ccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcctccgaattactgtcctagtcatgaaactcccata 39460336  T
Q  288 aaccgcagaatccgatgtctacactaaatc 317  Q
     ||  |||||||||||||  ||||||||||    
T  39460337 cacatcagaatccgatgttaacactaaatc 39460366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 39475459 - 39475592
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    ||||||||||||||||| ||||||||||||||||||| | |  | |||||| ||||  | |||||||||| ||||||||||||||| |||||||||||||    
T  39475459 atgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtc 39475558  T
Q  254 tccgagtaaccatcttagtcatcaaactcccaca 287  Q
    ||||||||||  | ||||| |||||| |||||||    
T  39475559 tccgagtaactgttttagttatcaaattcccaca 39475592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 318
Target Start/End: Complemental strand, 39458510 - 39458346
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    ||||||||||||||||| ||| ||||| |||  || | ||| ||||||||||||||  |||| || ||||| ||||||||||||||||||||||||||||    
T  39458510 atgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtc 39458411  T
Q  254 tccgagtaaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatcc 318  Q
    ||||| |||| ||||| ||||| ||| | ||||| ||  |||||   ||||||||||||||||||    
T  39458410 tccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcc 39458346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 39454592 - 39454701
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||| | ||| || ||| |||||||  |||||||||| ||||| |||||||||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  254 tccgagtaac 263  Q
    ||||| ||||    
T  39454692 tccgaataac 39454701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 39480326 - 39480435
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    ||||||||||||||||| ||| |||||||||  || | ||| ||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||    
T  39480326 atgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtc 39480425  T
Q  254 tccgagtaac 263  Q
    ||||| ||||    
T  39480426 tccgaataac 39480435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 43312729 - 43312605
Alignment:
Q  154 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 253  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| |||||||| |||||||||||||||||||    
T  43312729 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtc 43312630  T
Q  254 tccgagtaaccatcttagtcatcaa 278  Q
    |||| |||||| |||| ||||||||    
T  43312629 tccgtgtaaccgtcttggtcatcaa 43312605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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