View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_31 (Length: 343)
Name: NF7861_low_31
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 43397368 - 43397060
Alignment:
| Q |
18 |
cacacagcagcagcacaccaaacaacccgtcctaccactactaccacccatcagcaaaacaactgcgcccctaaccaaaaacccccagccagaccctctg |
117 |
Q |
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| T |
43397368 |
cacacagcagcagcacaccaaacaacccgtcctaccactactaccacccagcatcaaaacaactgcgcccctaaccaaacacccccagccagaccctctg |
43397269 |
T |
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| Q |
118 |
ttccaccaaaaaacagtaggggaactcctagcagagacacgacagcaggctcacgacacaccagaaccggcctcagacaactacaactgaagctaggcgc |
217 |
Q |
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| T |
43397268 |
ttccaccaaaaaacagtaggggaactcctagcagagacacgacagcaggctcacgacacaccagaaccggcctcagacaactacaactgaagctaggcgc |
43397169 |
T |
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| Q |
218 |
gcagcctttccctttcaagacaaacatagggattccaacaccattcgtagtaaaggcaaaccggaatcttcgtatgatgcaacaaccaccgccaagacat |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43397168 |
gcagcctttccctttcaagacaagcatagggattccaacaccattcgtagtaaaggcaaaccggaatcttcgtaccatgcaacaaccaccgccaagacat |
43397069 |
T |
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| Q |
318 |
aaccttgat |
326 |
Q |
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| T |
43397068 |
aaccttgat |
43397060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 6495552 - 6495524
Alignment:
| Q |
250 |
ttccaacaccattcgtagtaaaggcaaac |
278 |
Q |
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| T |
6495552 |
ttccaacaccattcgtagtaaaggcaaac |
6495524 |
T |
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