View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_33 (Length: 329)
Name: NF7861_low_33
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 3094081 - 3093763
Alignment:
| Q |
1 |
gtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094081 |
gtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatcca |
3093982 |
T |
|
| Q |
101 |
cccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093981 |
cccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaa |
3093882 |
T |
|
| Q |
201 |
tctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093881 |
tctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatg |
3093782 |
T |
|
| Q |
301 |
ttgacaatctgatgtccat |
319 |
Q |
| |
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|||||||||||||| |||| |
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| T |
3093781 |
ttgacaatctgatgaccat |
3093763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3085235 - 3084999
Alignment:
| Q |
1 |
gtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatcca |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || | | ||| || |||||||||||| |
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| T |
3085235 |
gtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatcca |
3085136 |
T |
|
| Q |
101 |
cccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaa |
200 |
Q |
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||||| || ||||||||||| ||||| || |||||| ||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||| |
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| T |
3085135 |
ccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttgagaattgaccaa |
3085036 |
T |
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| Q |
201 |
tctgcatttgtaatatttgtgagcaaattaaaaataa |
237 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
3085035 |
tctgcatttgtaatatttgtgagtaaattaaaaataa |
3084999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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