View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_34 (Length: 328)
Name: NF7861_low_34
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_34 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 25793703 - 25793400
Alignment:
| Q |
1 |
gaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793703 |
gaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattt |
25793604 |
T |
|
| Q |
101 |
tattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccgtatcatgattttgaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |
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| T |
25793603 |
tattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccatctcatgatttggaagg |
25793504 |
T |
|
| Q |
201 |
actgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatgaaaaatgataaatttaccaatt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793503 |
actgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatgaaaaatgataaatttaccaatt |
25793404 |
T |
|
| Q |
301 |
gctt |
304 |
Q |
| |
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|||| |
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| T |
25793403 |
gctt |
25793400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10377950 - 10378055
Alignment:
| Q |
1 |
gaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
10377950 |
gaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatttattt |
10378049 |
T |
|
| Q |
101 |
tattga |
106 |
Q |
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|||||| |
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| T |
10378050 |
tattga |
10378055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10075278 - 10075174
Alignment:
| Q |
1 |
gaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattt |
100 |
Q |
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||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
10075278 |
gaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaacatctgcagcagcaagattcatttattt |
10075179 |
T |
|
| Q |
101 |
tattg |
105 |
Q |
| |
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||||| |
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| T |
10075178 |
tattg |
10075174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 10136826 - 10136729
Alignment:
| Q |
8 |
gttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattttattg |
105 |
Q |
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|||| |||| ||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
10136826 |
gttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatctgcagcagcaagattcatttattttattg |
10136729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 10365502 - 10365559
Alignment:
| Q |
25 |
catataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagc |
82 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10365502 |
catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagc |
10365559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10134198 - 10134094
Alignment:
| Q |
1 |
gaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
10134198 |
gaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagactcatttattt |
10134099 |
T |
|
| Q |
101 |
tattg |
105 |
Q |
| |
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||||| |
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| T |
10134098 |
tattg |
10134094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 85894 - 85807
Alignment:
| Q |
18 |
aacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattttattg |
105 |
Q |
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|||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
85894 |
aacattccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattg |
85807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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