View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_35 (Length: 320)

Name: NF7861_low_35
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_35
NF7861_low_35
[»] chr4 (1 HSPs)
chr4 (1-298)||(3308242-3308539)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 3308242 - 3308539
Alignment:
Q  1 caacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3308242 caacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatc 3308341  T
Q  101 aggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3308342 aggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtg 3308441  T
Q  201 ttcttgagtgaggcggcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaatgacggtctttacaacttgt 298  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3308442 ttcttgagtgaggctgcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaatgacggtctttacaacttgt 3308539  T

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