View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_39 (Length: 274)
Name: NF7861_low_39
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 9998142 - 9997877
Alignment:
| Q |
1 |
cgcgattagcgttcatcttgtctccattccagcttgagtaagagaccatgatggttgagacacccttaatgattgagttatagtaagctggcatgtgaat |
100 |
Q |
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|||||||||| | |||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998142 |
cgcgattagcatgcatcttttctccattccagcttgagtatgagaccatgacggttaagacacccttaatgattgagttatagtaagctggcatgtgaat |
9998043 |
T |
|
| Q |
101 |
ggtaaacaattcatgtctggttgcaactgtgttatcctcattgattccttttgtcgttccaccatcaccaacaaagtgcttagcacaagctgcaactttc |
200 |
Q |
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| T |
9998042 |
gctaaacaattcatgtctgtttgcaactgtgttatcctcattgattccttttgttgttccaccatcaccgacaaagtgcttagcacaagctgcaactttc |
9997943 |
T |
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| Q |
201 |
ttgctttacaaggaaatgacaacaaaatcaaacaccaacacttagacaaattttttcattattcat |
266 |
Q |
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| T |
9997942 |
ttgctgtacaagaaaatgagaacaaaatcaaacaccaacacttagacgaattttatcattattcat |
9997877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10003845 - 10003616
Alignment:
| Q |
1 |
cgcgattagcgttcatcttgtctccattccagcttgagtaagagaccatgatggttgagacacccttaatgattgagttatagtaagctggcatgtgaat |
100 |
Q |
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| T |
10003845 |
cgcgattagaatgcatcttttctccattccagcttgagtatgagaccatgatggttaagacaaccttagtgatcgagttatagtaagcttgcatgtgaat |
10003746 |
T |
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| Q |
101 |
ggtaaacaattcatgtctggttgcaactgtgttatcctcattgattccttttgtcgttccaccatcaccaacaaagtgcttagcacaagctgcaactttc |
200 |
Q |
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| T |
10003745 |
gctaaacaattcatgtctggttgcaactgtgttatcctcattgattccttctgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttc |
10003646 |
T |
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| Q |
201 |
ttgctttacaaggaaatgacaacaaaatca |
230 |
Q |
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| T |
10003645 |
ttgctgtacaaggaaatgacaagaaaatca |
10003616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9990970 - 9990733
Alignment:
| Q |
1 |
cgcgattagcgttcatcttgtctccattccagcttgagtaagagaccatgatggttgagacacccttaatgattgagttatagtaagctggcatgtgaat |
100 |
Q |
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|||||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||| || || ||||| ||||||||||||||||||||||||||||| |
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| T |
9990970 |
cgcgattagcgtgcattttttctccgttccagcttgagtaagacaccatgatggttgacacgcctttaataattgagttatagtaagctggcatgtgaat |
9990871 |
T |
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| Q |
101 |
ggtaaacaattcatgtctggttgcaactgtgttatcctcattgattccttttgtcgttccaccatcaccaacaaagtgcttagcacaagctgcaactttc |
200 |
Q |
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| ||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9990870 |
gctaagcaattcatgtctggttgcgactgtgttattctcattgattccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttc |
9990771 |
T |
|
| Q |
201 |
ttgctttacaaggaaatgacaacaaaatcaaacaccaaca |
240 |
Q |
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||||| |||| ||| | |||||||||||||||||||| |
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| T |
9990770 |
ttgctgcgcaagaaaa--ataacaaaatcaaacaccaaca |
9990733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 10012498 - 10012264
Alignment:
| Q |
4 |
gattagcgttcatcttgtctccattccagcttgagtaagagaccatgatggttgagacacccttaatgattgagttatagtaagctggcatgtgaatggt |
103 |
Q |
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||||||| | ||| |||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10012498 |
gattagcatgcattttgtgtccattcaagcttgagtaagagatcatgacggttgcgacacccttaataattgagttatagtaagctggcatgtgaatgcc |
10012399 |
T |
|
| Q |
104 |
aaacaattcatgtctggttgcaactgtgttatcctcattgattccttttgtcgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttg |
203 |
Q |
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| T |
10012398 |
atagatttgatgtctgtttgcaactgtgttattctcattgattccttttgtcgttccaccatcaccgacaaagtgcttagcacaagctgcaactttcttg |
10012299 |
T |
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| Q |
204 |
ctttacaaggaaatgacaacaaaatcaaacaccaaca |
240 |
Q |
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|| |||||||| | |||||||||||||||||||| |
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| T |
10012298 |
ctgcgcaaggaaa--ataacaaaatcaaacaccaaca |
10012264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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