View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_41 (Length: 268)

Name: NF7861_low_41
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_41
NF7861_low_41
[»] chr4 (5 HSPs)
chr4 (58-152)||(6895381-6895475)
chr4 (18-61)||(6895024-6895067)
chr4 (190-233)||(6898908-6898951)
chr4 (151-195)||(6898820-6898864)
chr4 (19-61)||(46545761-46545803)
[»] chr8 (1 HSPs)
chr8 (18-61)||(33507586-33507629)
[»] chr7 (2 HSPs)
chr7 (18-61)||(21570015-21570058)
chr7 (18-59)||(18580496-18580537)
[»] chr6 (1 HSPs)
chr6 (19-61)||(28841464-28841506)
[»] chr5 (1 HSPs)
chr5 (19-61)||(21086764-21086806)
[»] scaffold0118 (1 HSPs)
scaffold0118 (18-59)||(44090-44131)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 6895381 - 6895475
Alignment:
Q  58 aggaagtaagtttgtattcctatggattagacattgtatatatactccttttagacaatcaatgaattagaagctcattttaatcaatttgttga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6895381 aggaagtaagtttgtattcctatggattagacattgtatatatattccttttagacaatcaatgaattagaagctcattttaattaatttgttga 6895475  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6895024 - 6895067
Alignment:
Q  18 caaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  6895024 caaattgacactggagaaaatcgaatttgagatcttgaggagga 6895067  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 6898908 - 6898951
Alignment:
Q  190 attaataaagtcgtctccgattcacaatcagcttttgtaagtat 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  6898908 attaataaagtcgtctcagattcacaatcagcttttgtaagtat 6898951  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 6898820 - 6898864
Alignment:
Q  151 gatatctttttatggtattagtgtagagagacatctcaaattaat 195  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  6898820 gatatctttttatggtatcagtgtagagagacatcttaaattaat 6898864  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 46545803 - 46545761
Alignment:
Q  19 aaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  46545803 aaattgacatcagagaaaatcgaatctgagatcttgaggagga 46545761  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 33507629 - 33507586
Alignment:
Q  18 caaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    |||| ||||| | |||||||||||||||||||||||||||||||    
T  33507629 caaactgacatcagagaaaatcgaatttgagatcttgaggagga 33507586  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 21570015 - 21570058
Alignment:
Q  18 caaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  21570015 caaattgacaccagagaaaatcgaacttgagaccttgaggagga 21570058  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 18580537 - 18580496
Alignment:
Q  18 caaattgacaccggagaaaatcgaatttgagatcttgaggag 59  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  18580537 caaattgacaccagggacaatcgaatttgagatcttgaggag 18580496  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 28841506 - 28841464
Alignment:
Q  19 aaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    |||||||||||||||| ||||||| |||||| |||||||||||    
T  28841506 aaattgacaccggagagaatcgaacttgagaccttgaggagga 28841464  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21086806 - 21086764
Alignment:
Q  19 aaattgacaccggagaaaatcgaatttgagatcttgaggagga 61  Q
    ||||||||||| |||| |||||||| |||||||||||||||||    
T  21086806 aaattgacaccagagataatcgaatctgagatcttgaggagga 21086764  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 44090 - 44131
Alignment:
Q  18 caaattgacaccggagaaaatcgaatttgagatcttgaggag 59  Q
    ||||||||||||| |||||||||||| |||||||| ||||||    
T  44090 caaattgacaccgaagaaaatcgaatatgagatctcgaggag 44131  T

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