View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_45 (Length: 246)

Name: NF7861_low_45
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_45
NF7861_low_45
[»] chr7 (1 HSPs)
chr7 (1-241)||(12543789-12544029)
[»] chr3 (1 HSPs)
chr3 (64-193)||(53018277-53018406)
[»] chr1 (4 HSPs)
chr1 (65-202)||(16501803-16501940)
chr1 (89-154)||(23723477-23723542)
chr1 (137-210)||(24432975-24433048)
chr1 (137-210)||(24430928-24431001)
[»] chr5 (1 HSPs)
chr5 (103-154)||(24658228-24658279)
[»] chr6 (1 HSPs)
chr6 (137-210)||(17452024-17452097)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12543789 - 12544029
Alignment:
Q  1 tatcgactaccaaattttgccgtcattgatgttagcttgggcattctttcttcgattgttcactgttgaatgctataattgtttgaaaaagggtcatatt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12543789 tatcgactaccaaattttgccgtcattgttgttagcttgggcattctttcttcgattgttcactgctgaatgctataattgtttgaaaaagggtcatatt 12543888  T
Q  101 atttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12543889 atttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaatctcgtc 12543988  T
Q  201 ccaattcttccgagtctatacttacaacttatgatgtccat 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12543989 ccaattcttccgagtctatacttacaacttatgatgtccat 12544029  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 53018406 - 53018277
Alignment:
Q  64 tgttgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgt 163  Q
    ||||||||| ||||| ||  |||||||||||||||||| |||||||||||||||||| || | ||||| ||| ||||||||||| |||||| ||||||||    
T  53018406 tgttgaatgttataactgcatgaaaaagggtcatattacttcaaattgttgtcgatactgcaagacagccggtcacttgattcaaaattgtctcactcgt 53018307  T
Q  164 cctcgacgatctgatcagaatatgaatcaa 193  Q
    |||| ||| |||||||| |||  |||||||    
T  53018306 cctccacggtctgatcaaaatcggaatcaa 53018277  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 16501803 - 16501940
Alignment:
Q  65 gttgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgtc 164  Q
    |||||||| |||||||| ||||||||||||||||||  |||||||||||||||||| || | ||||| |  ||| |||||||| ||||||  ||||| ||    
T  16501803 gttgaatgttataattgcttgaaaaagggtcatattgcttcaaattgttgtcgatactgcaagacagccaaacatttgattcaaaattgtcccactcatc 16501902  T
Q  165 ctcgacgatctgatcagaatatgaatcaacctcgtccc 202  Q
    ||| ||||| |||||| |||| |||||||| |||||||    
T  16501903 ctccacgatttgatcaaaataggaatcaacttcgtccc 16501940  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 23723477 - 23723542
Alignment:
Q  89 aagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgt 154  Q
    ||||||||||||  |||||||||||| | |||||||| ||||||||||||||||||||| ||||||    
T  23723477 aagggtcatatttcttcaaattgttgccaatattgtaagacagtcggacacttgattcaaaattgt 23723542  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 24433048 - 24432975
Alignment:
Q  137 cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc 210  Q
    ||||||||||| |||||   ||||||||||| |||| || ||||||| | ||||||||||||||| ||||||||    
T  24433048 cacttgattcaaaattgccccactcgtcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc 24432975  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 24430928 - 24431001
Alignment:
Q  137 cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc 210  Q
    ||||||||||| |||||   ||||| ||||| |||| || ||||||| | ||||||||||||||| ||||||||    
T  24430928 cacttgattcaaaattgccccactcttcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc 24431001  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 24658228 - 24658279
Alignment:
Q  103 ttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgt 154  Q
    ||||||||||||||||||||||| |||||| || ||||||||||| ||||||    
T  24658228 ttcaaattgttgtcgatattgtaagacagttgggcacttgattcaaaattgt 24658279  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 17452097 - 17452024
Alignment:
Q  137 cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc 210  Q
    ||||||||||| |||||   ||||||||||| |||| || ||||||| | ||||||||||||||| ||||||||    
T  17452097 cacttgattcaaaattgccccactcgtcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc 17452024  T

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