View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_5 (Length: 625)
Name: NF7861_low_5
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 15 - 609
Target Start/End: Original strand, 44209934 - 44210528
Alignment:
| Q |
15 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
114 |
Q |
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| T |
44209934 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
44210033 |
T |
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| Q |
115 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
214 |
Q |
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| T |
44210034 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
44210133 |
T |
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| Q |
215 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
314 |
Q |
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| T |
44210134 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
44210233 |
T |
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| Q |
315 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
414 |
Q |
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| T |
44210234 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
44210333 |
T |
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| Q |
415 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttactattttgttggttcattccaggatattgggga |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44210334 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttaccattttgttggttcattccaggatattgggga |
44210433 |
T |
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| Q |
515 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatg |
609 |
Q |
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| T |
44210434 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatg |
44210528 |
T |
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