View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_low_53 (Length: 213)

Name: NF7861_low_53
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_low_53
NF7861_low_53
[»] chr2 (6 HSPs)
chr2 (16-89)||(7381608-7381681)
chr2 (116-195)||(7381681-7381760)
chr2 (121-195)||(21603953-21604027)
chr2 (122-194)||(34392185-34392257)
chr2 (122-195)||(37358024-37358097)
chr2 (129-194)||(4775636-4775701)
[»] scaffold0032 (1 HSPs)
scaffold0032 (122-194)||(34189-34261)
[»] chr4 (9 HSPs)
chr4 (124-185)||(22343334-22343395)
chr4 (122-195)||(55590477-55590550)
chr4 (129-195)||(33249477-33249543)
chr4 (122-195)||(21260789-21260862)
chr4 (122-195)||(51811909-51811982)
chr4 (129-195)||(12473706-12473772)
chr4 (129-195)||(12528115-12528181)
chr4 (129-195)||(35869674-35869740)
chr4 (129-195)||(52012780-52012846)
[»] chr3 (13 HSPs)
chr3 (120-186)||(44380247-44380313)
chr3 (129-195)||(50934502-50934568)
chr3 (122-195)||(32319468-32319541)
chr3 (131-194)||(33509684-33509747)
chr3 (129-195)||(47426352-47426418)
chr3 (122-193)||(10179868-10179939)
chr3 (129-195)||(31187173-31187239)
chr3 (129-195)||(42664675-42664741)
chr3 (129-195)||(47186177-47186243)
chr3 (129-186)||(39498781-39498838)
chr3 (129-180)||(21963073-21963124)
chr3 (122-195)||(17466268-17466341)
chr3 (122-162)||(10123242-10123282)
[»] chr5 (12 HSPs)
chr5 (122-195)||(39570146-39570219)
chr5 (129-195)||(29989964-29990030)
chr5 (122-194)||(11607638-11607710)
chr5 (132-195)||(33858641-33858704)
chr5 (129-195)||(13015383-13015449)
chr5 (129-195)||(13086755-13086821)
chr5 (124-194)||(19357365-19357435)
chr5 (129-194)||(1826261-1826326)
chr5 (129-195)||(38010717-38010783)
chr5 (121-161)||(9827782-9827822)
chr5 (129-181)||(13421127-13421179)
chr5 (129-192)||(13478151-13478214)
[»] chr1 (10 HSPs)
chr1 (129-195)||(2569039-2569105)
chr1 (129-195)||(8809743-8809809)
chr1 (122-195)||(25161304-25161377)
chr1 (129-182)||(29119440-29119493)
chr1 (120-177)||(32676129-32676186)
chr1 (129-186)||(46435565-46435622)
chr1 (131-186)||(7214523-7214578)
chr1 (129-185)||(6223053-6223109)
chr1 (122-195)||(8462124-8462196)
chr1 (129-186)||(16679811-16679867)
[»] chr8 (5 HSPs)
chr8 (122-191)||(41179670-41179739)
chr8 (134-194)||(18168392-18168452)
chr8 (134-194)||(18631949-18632009)
chr8 (129-195)||(1514805-1514871)
chr8 (129-195)||(32825938-32826004)
[»] chr7 (3 HSPs)
chr7 (122-195)||(35341531-35341604)
chr7 (129-195)||(48250156-48250222)
chr7 (129-191)||(40856394-40856456)
[»] chr6 (6 HSPs)
chr6 (129-195)||(5403979-5404045)
chr6 (129-195)||(11113558-11113624)
chr6 (129-195)||(34245569-34245635)
chr6 (129-181)||(11753169-11753221)
chr6 (120-195)||(32644939-32645014)
chr6 (129-182)||(1211960-1212013)
[»] scaffold0263 (1 HSPs)
scaffold0263 (129-186)||(23095-23152)
[»] scaffold0229 (1 HSPs)
scaffold0229 (129-182)||(13122-13175)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 7381608 - 7381681
Alignment:
Q  16 atacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagttaatttgtgattacttattt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7381608 atacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagataatttgtgattacttattt 7381681  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 7381681 - 7381760
Alignment:
Q  116 ttttatggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||  ||||||||    
T  7381681 ttttatggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatg 7381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 21603953 - 21604027
Alignment:
Q  121 tggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||| |||||||||||||||||||| ||||||||||||  |||||||||||| ||||| |||| ||||||||    
T  21603953 tggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatg 21604027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 34392257 - 34392185
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||||| |||||||||||||| ||||| ||||||||||||  |||| |||||||||||||| ||| |||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 34392185  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 37358097 - 37358024
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| ||||||||| |||||||||| ||||| ||||||  |||||| |||||||||||||||| || |||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatg 37358024  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 4775636 - 4775701
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||| |||||||||||| || ||||| |||||||||||| ||||||||| ||| |||  |||||||    
T  4775636 acttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaat 4775701  T

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Target: scaffold0032 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 34189 - 34261
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaat 34261  T

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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 22343334 - 22343395
Alignment:
Q  124 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtca 185  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtca 22343395  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 55590477 - 55590550
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||| ||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatg 55590550  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 33249543 - 33249477
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||||||||||||||||  |||||||||||  |||| |||||||||||||||||| ||||||||    
T  33249543 acttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatg 33249477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 21260789 - 21260862
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||| | ||||||||||||| ||||| ||||||| |||| |||||||||||||||||| ||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatg 21260862  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 51811909 - 51811982
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| ||| |||||||||||||||||||| | |||||||||||| ||||||||||| || ||| ||||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatg 51811982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 12473706 - 12473772
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| ||||||||    
T  12473706 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatg 12473772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 12528115 - 12528181
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| ||||||||    
T  12528115 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatg 12528181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 35869740 - 35869674
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||| | |||| ||| ||||||||    
T  35869740 acttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatg 35869674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 52012780 - 52012846
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| | |||||| ||| ||||||||    
T  52012780 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatg 52012846  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 44380247 - 44380313
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  44380247 atggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcac 44380313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 50934502 - 50934568
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||||||||||    
T  50934502 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatg 50934568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||| ||| ||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 33509684 - 33509747
Alignment:
Q  131 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||||||| ||| |||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaat 33509747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 47426352 - 47426418
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| |||| |||||||  |||| |||||||||||||||||| || |||||    
T  47426352 acttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatg 47426418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaa 193  Q
    |||||| |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||| ||| ||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 31187239 - 31187173
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||| ||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||    
T  31187239 acttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatg 31187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 42664675 - 42664741
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||| | ||||||  |||||||||| |||||||| ||| ||||||||    
T  42664675 acttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatg 42664741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 47186177 - 47186243
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||    
T  47186177 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatg 47186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 39498838 - 39498781
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    |||||||||||||||| ||| ||||| ||||||||||||  |||||| ||||||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcac 39498781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 21963124 - 21963073
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtg 180  Q
    |||| ||||||||||||||||||||| ||||||  |||||||||| ||||||    
T  21963124 acttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 17466268 - 17466341
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| | |||||||| ||| |  |||||||||||||||| ||||  ||||||||||||||||| || |||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatg 17466341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 10123282 - 10123242
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatat 162  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatat 10123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 39570219 - 39570146
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| ||||||||| |||||| ||||||||||||||||  |||| |||||||||||||||||| ||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatg 39570146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 29989964 - 29990030
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||||||| ||| ||||||||    
T  29989964 acttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatg 29990030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 11607710 - 11607638
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||||| |||||| ||||||||||||| ||||||||||||  |||||||||||| |||||| ||| |||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaat 11607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 33858704 - 33858641
Alignment:
Q  132 tgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| |||||| ||| ||||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatg 33858641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 13015383 - 13015449
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||    
T  13015383 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatg 13015449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 13086755 - 13086821
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||    
T  13086755 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatg 13086821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 19357435 - 19357365
Alignment:
Q  124 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||| ||||||||||||||| |||| ||||||||||||  |||| |||||||||||||| ||| |||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 19357365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 1826261 - 1826326
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||||||| |||||||    
T  1826261 acttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaat 1826326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 38010783 - 38010717
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||    
T  38010783 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatg 38010717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 9827782 - 9827822
Alignment:
Q  121 tggattcaacttgtgtaccattaaggtatcaatggtatata 161  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  9827782 tggattccacttgtgtaccattaaggtaccaatggtatata 9827822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 13421179 - 13421127
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgt 181  Q
    |||||||||||||||||||||||||| ||||||  ||||| |||| |||||||    
T  13421179 acttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgt 13421127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 13478214 - 13478151
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttacca 192  Q
    |||||||||||||||||| | ||||| ||||||  |||||||||| |||||||| ||| |||||    
T  13478214 acttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacca 13478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 2569039 - 2569105
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||||||||||| ||| ||||||||    
T  2569039 acttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatg 2569105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 8809809 - 8809743
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||    
T  8809809 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatg 8809743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 25161304 - 25161377
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||||||||| || |||||||||||||  |||||||||||| |||||| ||| || |||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatg 25161377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 29119493 - 29119440
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtg 182  Q
    |||||||||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  29119493 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtg 29119440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 32676129 - 32676186
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattaga 177  Q
    |||||||| |||||||||||||||||||| ||||||||||||  |||| |||||||||    
T  32676129 atggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattaga 32676186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 46435622 - 46435565
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||| |||||    
T  46435622 acttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcac 46435565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 7214578 - 7214523
Alignment:
Q  131 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    ||||||||||||||||||  ||| |||||||||||||  |||||||||||||||||    
T  7214578 ttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcac 7214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 6223053 - 6223109
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtca 185  Q
    |||||||||||||||| ||||||||| ||||||| ||||| ||||||  ||||||||    
T  6223053 acttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtca 6223109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 8462124 - 8462196
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||  ||||| ||| ||||||||||||| ||||| |||||| |||||| ||| ||||||||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatg 8462196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 16679867 - 16679811
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    |||||||||||||||||||| ||||| |||||| ||||| ||||||||  ||||||||    
T  16679867 acttgtgtaccattaaggtaccaatgttatatactattg-ccaattaggatgtgtcac 16679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 41179739 - 41179670
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttacc 191  Q
    |||||| |||||||||||||||||||| ||||| ||||||| |||| ||||||| |||||||||| ||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctacc 41179670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 18168392 - 18168452
Alignment:
Q  134 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| |||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18168452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 18631949 - 18632009
Alignment:
Q  134 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaat 194  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| |||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 1514805 - 1514871
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  ||||| |||| |||||||  ||| ||||||||    
T  1514805 acttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatg 1514871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 32826004 - 32825938
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||| ||||||||| | ||||  |||| ||||||||||| |||||| || |||||    
T  32826004 acttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatg 32825938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 35341531 - 35341604
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||||||||||||| ||||| ||||||  |||||||||||| |||||| ||| ||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatg 35341604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 48250156 - 48250222
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||| ||||  ||||||||||||| ||| ||||||||    
T  48250156 acttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatg 48250222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 40856394 - 40856456
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttacc 191  Q
    |||| |||| ||||||||||  |||| ||||||||||||| ||||||||||||||||| ||||    
T  40856394 acttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 5404045 - 5403979
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||||||||||||||||  |||||||||||||||||  || ||||||| || ||| ||||||||    
T  5404045 acttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatg 5403979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 11113558 - 11113624
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||||||||||||||| ||||| ||||||  |||||| ||| |||||||||||| ||| ||||    
T  11113558 acttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatg 11113624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 34245569 - 34245635
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    ||||||||||||||||||||| |||| ||||||  |||||||||| | |||||| ||| ||||||||    
T  34245569 acttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatg 34245635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 11753169 - 11753221
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgt 181  Q
    |||||||||||||||||||| ||||||||||||  || | |||||||||||||    
T  11753169 acttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgt 11753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 32645014 - 32644939
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||||| || |||||||||||||| |||| || |||||||| |||| |||||||  ||||||||| ||| ||||    
T  32645014 atggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatg 32644939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 1212013 - 1211960
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtg 182  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| |||||    
T  1212013 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtg 1211960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 23095 - 23152
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    ||||||||| |||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  23095 acttgtgtatcattaaggtaccaatggtatatactattggccaattagggtctgtcac 23152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 13175 - 13122
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtg 182  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| |||||    
T  13175 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtg 13122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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