View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_6 (Length: 625)
Name: NF7861_low_6
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 607
Target Start/End: Original strand, 23379832 - 23380422
Alignment:
| Q |
16 |
tgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttctttatttagattttcttttaaagttgtgctactgtaatgtata |
115 |
Q |
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| T |
23379832 |
tgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttctttatttagattttcttttaaagttgtgctactgtaatgtata |
23379931 |
T |
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| Q |
116 |
caatgtacaagtacaaccgcnnnnnnnttaaaagaatgagaagtattacattatatactaccagtatcagtgaattatgatatttccatctatatggcca |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379932 |
caatgtacaagtacaaccgcaaaaaa-ttaaaagaatgagaagtattacattatatactaccagtatcagtgaattatgatatttccatctatatggcca |
23380030 |
T |
|
| Q |
216 |
atcataccgtcaaagaataaatcaatatacctatctcgtgtgcactaccctaaataaaaatcaacccttgccatgcatagaacttagtaatttaataatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23380031 |
atcataccgtcaaagaataaatcaatatacctatctcgtgtgcactgccctaaataaaaatcaacccttgccatgcatagaacttagtaatttaataatc |
23380130 |
T |
|
| Q |
316 |
ctatagtccatttcattggaattttttcaacacgcaccaactcctccagctgcagctcctcccccagctcc------acctccaccaccaccgtcaaacg |
409 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| || | || | ||||||| ||||||||||| | |
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| T |
23380131 |
ctatagtccattgcattggaattttttcaacatgcaccaactcctccagctacagctcctcccacaccaccgtcaaaagctccaccgccaccgtcaaaag |
23380230 |
T |
|
| Q |
410 |
ctccatcgccactgccaccgtcaaatgctccacctcctccgccgccatcaaatgcaccacctccgccgccaaattctcccccaccattgtcaaatgctcc |
509 |
Q |
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|| |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23380231 |
ct------ccaccgccaccgtcaaatgctccacctcctccgccaccatcaaatgctccacctccgccgccaaattctcccccaccattgtcaaatgctcc |
23380324 |
T |
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| Q |
510 |
atctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccgtcaaaacctccccctccgccaccgccaccgcttccatatg |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
23380325 |
atctccgcccccaccatcttcacctccacctcctccatcaaatgctccacctccgccatcaaaacctccacctccgccaccgccaccgcttccatatg |
23380422 |
T |
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