View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_7 (Length: 617)
Name: NF7861_low_7
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 44575361 - 44574812
Alignment:
| Q |
20 |
atcagaattgggatattattatctatcctatgcatgttggtagctgcagttattgagaaaaagcgtcgtgactcggctttgaaacacaattcgtttattt |
119 |
Q |
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| T |
44575361 |
atcagaattgggatattattatctatcctatgcatgttggtagctgcagttgttgagaaaaagcgtcgtgactcggctttgaaacacaattcgtttattt |
44575262 |
T |
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| Q |
120 |
cgcctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgttgctataatggaattctttacccttcaagt |
219 |
Q |
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| T |
44575261 |
cgcctgtgagctttggtttgctcttgccgcagtttgcgctgtccggtttaaatgaagcctttgctgctgttgctataatggaattctttacccttcaagt |
44575162 |
T |
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| Q |
220 |
gccggagtctatgaggactgtttctggtgccatcttctttttgagcctgtccattgcaaactacactggttccttaattgtcaacattgttcataaagca |
319 |
Q |
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| T |
44575161 |
gccggagtctatgaggactgtttctggtgccatcttctttttgagcctgtccattgcaaactacactggttccttaattgtcaacattgttcataaagca |
44575062 |
T |
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| Q |
320 |
acatcacataaagggaaaacaccttggttaggtggtcaagatttaaatcatactaggcttgattactattattatttaattgcttccattggagttttga |
419 |
Q |
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| T |
44575061 |
acatcacataaagggaaaacaccttggttaggtggtcaagatttaaatcatactaggcttgattactattattatttaattgcttccattggagttttga |
44574962 |
T |
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| Q |
420 |
attttatctatttcaacttctttgcttgccattatttgataagtggcaaggaaattgagaaagctgaggtgcaaccaattgctagtgtgaagggagaatc |
519 |
Q |
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| T |
44574961 |
attttatctatttcaacttctttgcttgccattatttgataagtggcaaggaaattgagaaagctgaggtgcaaccaattgctagtgtgaagggagaatc |
44574862 |
T |
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| Q |
520 |
agatgaacaagatgatgaggaaaaggttttggatagagtaggcactagat |
569 |
Q |
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| T |
44574861 |
agatgaacaagatgatgaggaaaaggttttggatagagtaggcactagat |
44574812 |
T |
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