View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_low_8 (Length: 616)
Name: NF7861_low_8
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_low_8 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Complemental strand, 29373279 - 29372696
Alignment:
| Q |
19 |
ctatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaatcaacaat--ccctgccactctgctggaccagcagccaacaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
29373279 |
ctatggaccctaaaggcaatgccagccgcagcacacagacacaccatagcagaaaaatcaacagtggccctgccactctgctggaccagcagccaacaaa |
29373180 |
T |
|
| Q |
117 |
cccaatcggacaccaaaacagtcccaaacagagacgaaaactccactacctcctcagtcactccctcgggttccaacaccactaataaaagaggccataa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
29373179 |
cccaatcggacaccaaaacagtcccaaacagagacgaaaactccactacctcctcagtcactctctcaggttccaacaccactcataaaagaggccataa |
29373080 |
T |
|
| Q |
217 |
acaatcttcaatctactcaaagtccaatgctatgaaacaagcttgatttcttcaacaacctcatcaatatcctttcctttatcattgaaaattctcccat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29373079 |
acaatcttcaatctactcaaagtccaatgctatgaaacaagcttgatttcttcaacaacctcatcaatatcctttcctttatcattgaaaattctcccat |
29372980 |
T |
|
| Q |
317 |
tttgttatctccaaataacccaaagaacggcatgcgaaataaacacataacctctcttcaatttattcactttcgctccatcccgccaacactccaagtg |
416 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29372979 |
tttgttatctccaaataacccaaagaacggcatgccaaataaacacataacctatcttcaatttattcactctcgctccatcccgccaacactccaagtg |
29372880 |
T |
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| Q |
417 |
gatgaacaaattattcggggcaataaaattcaattcaagccataaaccaatattattacttgaacaatttgatatacttgccaagtgtccctcaagctgc |
516 |
Q |
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| T |
29372879 |
gatgaacaaattattcgaggcaataaaattcaattcaagccataaaccaatattattacttgaacaatttgatatacttgccaagtgtccctcaagctgc |
29372780 |
T |
|
| Q |
517 |
aagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcatgaataccaatgacctctttttaatatgatg |
600 |
Q |
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| T |
29372779 |
aagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcacgaataccaatgacctctttttaatatgatg |
29372696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 11682018 - 11682133
Alignment:
| Q |
20 |
tatggaccctaaaggcaatgccagccgcagcacacagactcaccatagcagaaaaatcaacaatc-cctgccact-ctgctggaccagcagccaacaaac |
117 |
Q |
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| T |
11682018 |
tatggaccctaaaggcaatcccagccgaggcaca--gacaaaccatagcagaaaaaccaacattggcctgctacaactgctgaaccagcagccaacaata |
11682115 |
T |
|
| Q |
118 |
ccaatcggacaccaaaac |
135 |
Q |
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| T |
11682116 |
ccaatcggacaccaaaac |
11682133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 10643011 - 10642960
Alignment:
| Q |
99 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
150 |
Q |
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| T |
10643011 |
ggaccagcagccaacaacaccaatcagacaccaaaacagacccaaacagaga |
10642960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 32712827 - 32712878
Alignment:
| Q |
99 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
150 |
Q |
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| T |
32712827 |
ggaccagcagccaacaacaccaatcgaacaccaaaacagacccaaacagaga |
32712878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 516 - 599
Target Start/End: Original strand, 45087928 - 45088011
Alignment:
| Q |
516 |
caagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcatgaataccaatgacctctttttaatatgat |
599 |
Q |
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||||||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
45087928 |
caagcgcactattatatctcgtaataaaacatcgttcctacgagaactttgttatgaatactgatgaactctttttaatatgat |
45088011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 3585 - 3534
Alignment:
| Q |
99 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
150 |
Q |
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| T |
3585 |
ggaccagcagccaacaacaccaatcggacaccaaaacagacccaaacagaga |
3534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 23923638 - 23923689
Alignment:
| Q |
99 |
ggaccagcagccaacaaacccaatcggacaccaaaacagtcccaaacagaga |
150 |
Q |
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| T |
23923638 |
ggaccagcagccaacaacgccaatcggacaccaaaacagacccaaacagaga |
23923689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 23923520 - 23923561
Alignment:
| Q |
94 |
ctgctggaccagcagccaacaaacccaatcggacaccaaaac |
135 |
Q |
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| T |
23923520 |
ctgctggaccagcagccaacaacaccaattggacaccaaaac |
23923561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 17257131 - 17257070
Alignment:
| Q |
175 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaa |
236 |
Q |
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|||||||| |||||||||||||||| |||||||||| | || |||||||||| |||||||| |
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| T |
17257131 |
cactcccttgggttccaacaccactcgtaaaagaggcaagaagcaatcttcaacctactcaa |
17257070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 43441337 - 43441405
Alignment:
| Q |
175 |
cactccctcgggttccaacaccactaataaaagaggccataaacaatcttcaatctactcaaagtccaa |
243 |
Q |
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| T |
43441337 |
cactctctcggattccaacaccactcgtaaaagaagcaagaaactatcctcaatctactcaaagaccaa |
43441405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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