View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7862_high_2 (Length: 370)
Name: NF7862_high_2
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 23030716 - 23031052
Alignment:
| Q |
18 |
gaaaattgcaacaaaatttgcactacatataaagtgatacgtaataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23030716 |
gaaaattgcaacaaaatttgcactacatataaagtgatacgtaataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtg |
23030815 |
T |
|
| Q |
118 |
gtagagcctctaatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23030816 |
gtagagcctctaatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaa |
23030915 |
T |
|
| Q |
218 |
gaaagcaattccaccacattgttttaaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagcc |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
23030916 |
gaaagcaattccaccacattgttttcaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagcc |
23031015 |
T |
|
| Q |
318 |
acaaattattttcctacccttccacataacctctcat |
354 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23031016 |
acaaattactttcctacccttccacataacctctcat |
23031052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University