View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_1 (Length: 900)
Name: NF7862_low_1
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 22 - 483
Target Start/End: Complemental strand, 17682625 - 17682164
Alignment:
| Q |
22 |
cttctttcatcaatttcaaaaggagccccacccctcctttctcgataatcatctccccgtaacggtggctttcatttgctagaaatacgagggatgcggc |
121 |
Q |
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| T |
17682625 |
cttccttcatcaatttcaaaaggggccctactcctccttcttcgatgatcatctccccataacggtcgctttcatttgctagaaatacgagggatgcggc |
17682526 |
T |
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| Q |
122 |
tgcatcagaatgatcatccaacgagtcagtacgaaggatggaaatttgttcgcaaatgaaggagacaacgtgcttgtccgctgctatgtcagaaacgaaa |
221 |
Q |
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| T |
17682525 |
tgcatcagaacgatcctccaacgagtcagtatgaaggatggaaatttgttcgcaaatgaaggagacaacttgcttgtccgctgctatgtcagaaacgaaa |
17682426 |
T |
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| Q |
222 |
agagcgatggctcttgcagcagtttgttttccttcttgtgtgttcccttctttcatcaacttcaaaatgggaaccacccctccttcctcgatgagataat |
321 |
Q |
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| T |
17682425 |
agagcaatggctcttgcagcagtttgttttccttcttttgtgttcccttctttcatcaacttcaaaatgggaaccacccctccttccaggatgattatac |
17682326 |
T |
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| Q |
322 |
gtttgcaaaagttgctgttgtgtgctagtgacagaagttcagcggcggcatctgaacgatccttgggggagccggtacggaggatggcgatctgttccca |
421 |
Q |
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| T |
17682325 |
atgtgtaaaagttgatgtcgtctgctagtgacataagtgaagcggcggcgtccgaacgatccttcggggagccggtacggaggatggccatctgttccca |
17682226 |
T |
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| Q |
422 |
aatgaggccaatcatgcgataatttgcggctatgggaggaaggtcgagatacttgttgtcgt |
483 |
Q |
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| T |
17682225 |
aatgtggtaaatcatgccagtatttgcggctatgggaggaaggccgatatactggttatcgt |
17682164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 478 - 780
Target Start/End: Complemental strand, 17682310 - 17682023
Alignment:
| Q |
478 |
tgtcgtgtgatagtgatagaactgaagctgcctcgtccgaacgatcctttggggagtcga---ggaggatggcgatcggttcccaaatgaggccactgat |
574 |
Q |
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| T |
17682310 |
tgtcgtctgctagtgacataagtgaagcggcggcgtccgaacgatccttcggggagccggtacggaggatggccatctgttcccaaatgtggtaaatcat |
17682211 |
T |
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| Q |
575 |
gagataatttgcggttatgggaggaaggccgagatactggttgtcgttttggggggaggaggtacggaggagccaggaaacgttgacaatggaattttca |
674 |
Q |
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| T |
17682210 |
gccagtatttgcggctatgggaggaaggccgatatactggttatcgtcgtggagggaggagatacggaagagccaggaaaagttgccaatggaattttga |
17682111 |
T |
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| Q |
675 |
agtttaaaggaagttttgctaaaagcggagacggagacggagacggagatggggatgatgatgaatatgcgcttcttgagaagcaaggaaagagccttgt |
774 |
Q |
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| T |
17682110 |
agtttggtggaagttttgctaaaagcggagac------------------ggggatgatgatgaatatgcgcttcttgagaagcaaggaaagagccttgt |
17682029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 17666092 - 17665903
Alignment:
| Q |
85 |
ggtggctttcatttgctagaaatacgagggatgcggctgcatcagaatgatcatccaacgagtcagtacgaaggatggaaatttgttcgcaaatgaagga |
184 |
Q |
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| T |
17666092 |
ggtggctttcatgtgccagtaacacgagggatgcagcggcgtcagaacaatcctctggcgagtcggtacgaaggatggaaatcagttcacaaataaagga |
17665993 |
T |
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| Q |
185 |
gacaacgtgcttgtccgctgc-tatgtcagaaacgaaaagagcgatggctcttgcagcagtttgttttccttcttgtgtgttcccttctt |
273 |
Q |
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| T |
17665992 |
gacaatgggtccgtctgcggcttatgttggagtcgaagaaagcaatggctcttgaagcattctgtttgccttcttgtgtgtttccttctt |
17665903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 840 - 883
Target Start/End: Complemental strand, 17681957 - 17681914
Alignment:
| Q |
840 |
gcctgtcggagaagatcggagagtttctccactttggatttgat |
883 |
Q |
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| T |
17681957 |
gcctgccgtagaagatcggagagtttctccactttggatctgat |
17681914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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