View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_10 (Length: 240)
Name: NF7862_low_10
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41319783 - 41320005
Alignment:
| Q |
1 |
cgttgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaa |
100 |
Q |
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| T |
41319783 |
cgttgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaa |
41319882 |
T |
|
| Q |
101 |
tattctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtattttcttagaatcctaatcaaattttcggtgacgaagacggt |
200 |
Q |
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| T |
41319883 |
tattctgcaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtattttcttagaatcctaatcaaattttcggtgacgaagacggt |
41319982 |
T |
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| Q |
201 |
atcatcgtcacccatgacgaacc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
41319983 |
atcatcgtcacccatgacgaacc |
41320005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 11092121 - 11092000
Alignment:
| Q |
40 |
gccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatattctgtaaatgactttcagataaacttccaatgtaat |
139 |
Q |
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| T |
11092121 |
gccaaaggataacttatagcaaatccaccaccaccataagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaat |
11092022 |
T |
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| Q |
140 |
aaaattgattatgatcgtattt |
161 |
Q |
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|||||||||||||||| ||||| |
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| T |
11092021 |
aaaattgattatgatcatattt |
11092000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 2619444 - 2619293
Alignment:
| Q |
4 |
tgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatat |
103 |
Q |
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|||||||| |||||||||||||| || ||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| | |||| |
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| T |
2619444 |
tgaatacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataagccataccataagaaaaatatatat |
2619345 |
T |
|
| Q |
104 |
tctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatc |
155 |
Q |
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|||| |||||||| || |||||||| ||||| || ||||| || |||||||| |
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| T |
2619344 |
tctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatc |
2619293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 22776441 - 22776602
Alignment:
| Q |
1 |
cgttgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaa |
100 |
Q |
| |
|
||||||||||| ||||||||||| || |||| | || |||||||| ||||||||||||||||| |||||||||||||||||| |||| || || | |
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| T |
22776441 |
cgttgaatacaacgatcctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcatacgagaaatgta |
22776540 |
T |
|
| Q |
101 |
tattctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtatttt |
162 |
Q |
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|
| T |
22776541 |
tgttctgaacatgactctcagaggagcttccaacataataaaattgagtatgatcatatttt |
22776602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 29613097 - 29613176
Alignment:
| Q |
40 |
gccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatattctgtaaatgactttc |
119 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||| || |||||||| |
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| T |
29613097 |
gccaaaggataactaatagcaaatccaccaccaccataagccatattataagaaaaattaatattctgaaagtgactttc |
29613176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 22959981 - 22960025
Alignment:
| Q |
39 |
cgccaaaggatagcttatagcaaatccaccaccaccataagccat |
83 |
Q |
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|
| T |
22959981 |
cgccaaaggatagcttatagcaaaccctccgccgccataagccat |
22960025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 40945094 - 40945197
Alignment:
| Q |
40 |
gccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatattctgtaaatgactttcagataaacttccaatgtaat |
139 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||||| | |||||| ||||| |||| |||| |||| |
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| T |
40945094 |
gccaatggataacttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataat |
40945193 |
T |
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| Q |
140 |
aaaa |
143 |
Q |
| |
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|||| |
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|
| T |
40945194 |
aaaa |
40945197 |
T |
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