View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_3 (Length: 457)
Name: NF7862_low_3
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 8233275 - 8233717
Alignment:
| Q |
15 |
acaaacaaaattggaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattgg |
114 |
Q |
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| T |
8233275 |
acaaacaaaattggaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtctttttccaagaccatttgaattgg |
8233374 |
T |
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| Q |
115 |
catgaaacccattccatctgccattgcaagcataatttgcttagtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactgt |
214 |
Q |
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| T |
8233375 |
catgaaacccatcccatctgccattgcaagcatcatctgcttagtttctttcttgaattcttccaaatcaattgtgccattcaagttgtgatcgaactgt |
8233474 |
T |
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| Q |
215 |
atgaacaaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttca |
314 |
Q |
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| T |
8233475 |
gtgaacaaagattcataaacacgagcaagctcatttgggtctgaaaccacatcaataccaaagtgtgtttcaaaaaccctcaagctccggagctccttca |
8233574 |
T |
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| Q |
315 |
acatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtg |
414 |
Q |
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| T |
8233575 |
acatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtg |
8233674 |
T |
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| Q |
415 |
gacaattgtggcaccatccaaaatttctacactcatctttctt |
457 |
Q |
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| T |
8233675 |
gacaattgtggcaccatccaaaatttctacactcatctttctt |
8233717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 57 - 455
Target Start/End: Original strand, 8223556 - 8223954
Alignment:
| Q |
57 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
156 |
Q |
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| T |
8223556 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
8223655 |
T |
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| Q |
157 |
agtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactgtatgaacaaagattcataaacacgagcaagctcatttgggtct |
256 |
Q |
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| T |
8223656 |
agtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactgtatgaacaacgactcataaacacgagcaagctcatttgggtct |
8223755 |
T |
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| Q |
257 |
gaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcga |
356 |
Q |
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| T |
8223756 |
gaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatctcatcataggagagcagaccatccttatttgtgtcga |
8223855 |
T |
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| Q |
357 |
ggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttc |
455 |
Q |
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| T |
8223856 |
gccgagcaaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaaatggacaattgtggcaccatccaaaatttctacactcatctttc |
8223954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 63 - 456
Target Start/End: Original strand, 8236670 - 8237063
Alignment:
| Q |
63 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgcttagtttc |
162 |
Q |
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| T |
8236670 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccatcccatctgccattgcaagcatcatctgcttagtttc |
8236769 |
T |
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| Q |
163 |
tttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatcc |
262 |
Q |
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| T |
8236770 |
cttcttgaattcttccaaatcaattgtgccattcaagttgtgatcgaattgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatcc |
8236869 |
T |
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| Q |
263 |
acatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgag |
362 |
Q |
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| T |
8236870 |
acatcaataccaaagtgtgtttcaaaaatcctcaagctccggagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgag |
8236969 |
T |
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| Q |
363 |
cgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
456 |
Q |
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| T |
8236970 |
cgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaattgtggcaccatccaaaatttccacactcatttttct |
8237063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 298 - 456
Target Start/End: Original strand, 8239872 - 8240030
Alignment:
| Q |
298 |
gctcctgagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttct |
397 |
Q |
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| T |
8239872 |
gctcctgagctccttcaacatctcatcataagagagcagaccatccttatttgtgtcgagccgagcaaactgatttcctactgagctattaaacgcttct |
8239971 |
T |
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| Q |
398 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
456 |
Q |
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| T |
8239972 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
8240030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 8211079 - 8211191
Alignment:
| Q |
57 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
156 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
8211079 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaacccaatccatctgccattgcgagcataatttgctt |
8211178 |
T |
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| Q |
157 |
agtttctttcttg |
169 |
Q |
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| T |
8211179 |
agtttctttcttg |
8211191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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