View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_5 (Length: 361)
Name: NF7862_low_5
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 182 - 350
Target Start/End: Original strand, 14393194 - 14393362
Alignment:
| Q |
182 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
281 |
Q |
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| T |
14393194 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
14393293 |
T |
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| Q |
282 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgt |
350 |
Q |
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| T |
14393294 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgt |
14393362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 14380167 - 14380348
Alignment:
| Q |
1 |
cattagctaagactcgagagtatgttcaaattgatggtatagtattgaaccaatgaaatgaaatgagataatatcccttttacaaatctaaaaaacctat |
100 |
Q |
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| T |
14380167 |
cattagctaagactcgagagtatgttcaaattgatggtatagtgtggaaccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctat |
14380266 |
T |
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| Q |
101 |
tccatttcattttactacattccgccctatgtaagcaattcaaatgtatcctaaaatatatgaatttccaaaacacgatgga |
182 |
Q |
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| T |
14380267 |
tccatttcattctactacattccgccctatgtaagcaattcaaatgtatcctaaaatacatgaatttccaaaacacgatgga |
14380348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 14246030 - 14245927
Alignment:
| Q |
9 |
aagactcgagagtatgttcaaattgatggtatagtattgaaccaatgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttc |
108 |
Q |
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||||||| |||||||||| ||| |||||||||||| | || | ||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
14246030 |
aagactcaagagtatgtttaaactgatggtatagtgtgaaattagtgaaatgaagtgagataatatccatttttcaaatctaaaaaacatattccatttc |
14245931 |
T |
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| Q |
109 |
attt |
112 |
Q |
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|||| |
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| T |
14245930 |
attt |
14245927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 14358346 - 14358302
Alignment:
| Q |
298 |
ttgtaattacaattctgtatgtttaactattttcttagtcttgat |
342 |
Q |
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| T |
14358346 |
ttgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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