View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_6 (Length: 338)
Name: NF7862_low_6
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 7820361 - 7820076
Alignment:
| Q |
38 |
tctttttacaaaccttctccaagcttctaaaccctcaaacacgattcccatatcttctaaaaatataactaaccctttcttcgattcacgtccttttctt |
137 |
Q |
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| T |
7820361 |
tctttttacaaaccttctccaagcttctaa-ccctcaaacacgattcccatctcttctaaaaatataactaaccctttcttcaattcacgtccttttctt |
7820263 |
T |
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| Q |
138 |
cacagattcctcaatctttttcaattcattccaaaaccctcaaacacccaaacccatttgattccctcaaacccaatcttcaaccaattgtaaaaccctc |
237 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
7820262 |
cactgattcctcaatctttttcaattcattccaaaaccctcaaacacccaaacccattcgattccctcaaacccaatcttcaaccgattgcaaaaccctc |
7820163 |
T |
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| Q |
238 |
aaacacccaaacgatttctcaatgttgccgatctgaaaccctcatctttggtccatgtcgaagtcttctctcaacttggtgagtttg |
324 |
Q |
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| T |
7820162 |
aaacacccaaacgatttctcaatgttgccgatctaaaaccctcatctatggtccatgtcgaagttttctctcaacttggtgagtttg |
7820076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 18561425 - 18561214
Alignment:
| Q |
112 |
ctttcttcgattcacgtccttttcttcacagattcctcaatctttttcaattcattccaaaaccctcaaacacccaaacccatttgattccctcaaaccc |
211 |
Q |
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|||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
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| T |
18561425 |
ctttcttctattcctgtccttttcttcaccgattcctcaatcttttttaattcattccaataccctcaaacacccaa-cccattcgattccctcaaaccc |
18561327 |
T |
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| Q |
212 |
aatcttcaaccaattgtaaaaccctcaaacacccaaacgatttctcaatgttgccgatctgaaaccctcatctttggtccatgtcgaagtcttctctcaa |
311 |
Q |
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||||||||||| |||| ||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18561326 |
aatcttcaaccgattgcaaaactctcaaagacccaaactattcctcaatgttgccgatctgaaaccctcatctttggtccctgtcgaagtcttctctcaa |
18561227 |
T |
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| Q |
312 |
cttggtgagtttg |
324 |
Q |
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||||||||||||| |
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| T |
18561226 |
cttggtgagtttg |
18561214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 19537553 - 19537609
Alignment:
| Q |
154 |
tttttcaattcattccaaaaccctcaaacacccaaacccatttgattccctcaaacc |
210 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19537553 |
tttttcaattgataccaaaaccctcaaacacccaaacccatttgattccctcaaacc |
19537609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 26215329 - 26215385
Alignment:
| Q |
154 |
tttttcaattcattccaaaaccctcaaacacccaaacccatttgattccctcaaacc |
210 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26215329 |
tttttcaattgataccaaaaccctcaaacacccaaacccatttgattccctcaaacc |
26215385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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