View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7862_low_9 (Length: 246)
Name: NF7862_low_9
Description: NF7862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7862_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 23031255 - 23031019
Alignment:
| Q |
10 |
agaacctgtgttagagtggtggcggcgatgactatatttccacgaaaaataaggaaccaagagacatgaatgaagaacaaggccaactaaatcgtcgacc |
109 |
Q |
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| T |
23031255 |
agaacctgtgttagagtggtggcggcgatgactatatttccacgaaaaataaggtaccaagaggcaagaatgaaggacaaggccaactaaatcgtcgacc |
23031156 |
T |
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| Q |
110 |
cattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttggatgacccaataaacggcccacgcca |
209 |
Q |
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| T |
23031155 |
cattgataattactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgcatccttggatggcccaataaacgggccacgcca |
23031056 |
T |
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| Q |
210 |
aaaatgagaggttatgtggaagggaaggaaaataatt |
246 |
Q |
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| T |
23031055 |
aaaatgagaggttatgtggaagggtaggaaagtaatt |
23031019 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 50593934 - 50593858
Alignment:
| Q |
109 |
ccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttgga |
185 |
Q |
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| T |
50593934 |
ccattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
50593858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 37020088 - 37019912
Alignment:
| Q |
10 |
agaacctgtgttagagtggtggcggcgatgactatatttccacgaaaaataaggaaccaagagacatgaatgaagaacaaggccaactaaatcgtcgacc |
109 |
Q |
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|||||| ||||| || |||||||||||||| || |||||||| ||||| ||||| || | || || || |||| |||||||||| ||| || | | |
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| T |
37020088 |
agaaccggtgttggaatggtggcggcgatggctgtatttccatgaaaagtaaggcacaagaagggcagagtggagaataaggccaactgtatcatcaagc |
37019989 |
T |
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| Q |
110 |
cattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttggat |
186 |
Q |
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|||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||| |
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| T |
37019988 |
cattgatagtcactgaatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaaccttggat |
37019912 |
T |
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