View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_20 (Length: 393)
Name: NF7863_high_20
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 381
Target Start/End: Original strand, 6343114 - 6343468
Alignment:
| Q |
21 |
cattttcaattgtcactatttccttcatcgctcatatgaattagctgttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaa |
120 |
Q |
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| T |
6343114 |
cattttcaattgtgactatttccttcatcgctcatatgaattagctgttaaaaggtaggtcgtatcagactttcaaaatgtcatatttaaacctaaaaaa |
6343213 |
T |
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| Q |
121 |
taaatctatgatagaccgcatgctagacataggccttaaattttctgacagattatacttaggtcttgcaaaatttagttcgaccttgcctattatattt |
220 |
Q |
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| T |
6343214 |
taaatttatgatagaccgcatgctagatacaggccttaaattttttaacagattatccttaagtcttgcaaaatttagttcgacc-tgcc-----tattt |
6343307 |
T |
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| Q |
221 |
caaaaattgctcaaattcatttcataattgttcattcccttaattcatcggaagttaactgttgctcggtatttttcagcggcagttcagatcggtttat |
320 |
Q |
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| T |
6343308 |
caaaaattgctcaaatctatttcataattgttcattcgcttaattcattggaagttaactgttgctcgatatttttcagcggcagttcagatcggtttat |
6343407 |
T |
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| Q |
321 |
tcattttttaagttggtgtaaatagcaatatgtaccccatattcgcttcccatgatgtcca |
381 |
Q |
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| T |
6343408 |
tcattttttaagttgatgtaaatagaaatatgtaccccatattcgcttcccatgacgtcca |
6343468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 6342387 - 6342586
Alignment:
| Q |
68 |
ttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctg |
167 |
Q |
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| T |
6342387 |
ttaaatagtaggtcatatcagatttttaaaatgtcacattcaaacctaaataataaacctacgacacgccacatgctagacattgatcttaaaaattttg |
6342486 |
T |
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| Q |
168 |
acagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaattgctcaaattcatttcataattgttcattcccttaattca |
267 |
Q |
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| T |
6342487 |
gtagattagacttagattttgcaaaatttagttcggcctaacctattatattttgaagattgctctaatccatgtcctaattattcatcccattaattca |
6342586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 9710930 - 9711030
Alignment:
| Q |
83 |
tatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctgacagattatacttag |
182 |
Q |
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| T |
9710930 |
tatcagactttaaaaatatcaaattcagttttaaaatataagtctatgataaaccgcatgttaaatttaggtcttaaattttttgacaaattagacttag |
9711029 |
T |
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| Q |
183 |
g |
183 |
Q |
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| T |
9711030 |
g |
9711030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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