View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_23 (Length: 377)
Name: NF7863_high_23
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43462333 - 43462111
Alignment:
| Q |
1 |
ttgcatttctgttgcacttgtacatgattctccattattgcactctggtggccttgcatgcctaatgattgcagtaagccacaacacaattaatccctgc |
100 |
Q |
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| T |
43462333 |
ttgcattcctgttgcacttgtacatgattctccattattgcactctggtggccttgcatgcctaatgattgcagttagccacaacacaattaatccctgc |
43462234 |
T |
|
| Q |
101 |
aatgaattaagattcttaaccaaatttcaccaaaccactcacatacaaaaattatataataaaattaaaattaacattactagaaactaaatggtcaatt |
200 |
Q |
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| T |
43462233 |
aatgaattaagattcttaaccaaatttcaccaaaccactcacatacaaaaattatataataaaattaaaattaacattactagaaactaaacggtcaatt |
43462134 |
T |
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| Q |
201 |
aagtttcaaaattcatcttgaac |
223 |
Q |
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||||||||||||| | ||||||| |
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| T |
43462133 |
aagtttcaaaattaaccttgaac |
43462111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 43462060 - 43461936
Alignment:
| Q |
234 |
aatagaagtatttataattagcttacgagaaggtcgatgattgttccccaagcaataacacgaaatcgtccaaggcaagaatcagaaagtaaagcaccaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462060 |
aatagaagtatttataattagcttacgagaaggtcgatgattgttccccaagcaataacacgaaatcgtccaaggcaagaatcagaaagtaaagcaccaa |
43461961 |
T |
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| Q |
334 |
aaagtggcataaaattggatccagc |
358 |
Q |
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| T |
43461960 |
aaagtggcataaaattggatccagc |
43461936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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