View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_28 (Length: 351)
Name: NF7863_high_28
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 53466920 - 53467256
Alignment:
| Q |
9 |
tggacatcacatgatctttatcaaaaccatggtagcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatgg |
108 |
Q |
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| T |
53466920 |
tggacatcacatgatctttatcaaaaccatggtcgcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatgg |
53467019 |
T |
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| Q |
109 |
tggtgagacaacatgtcctgttgagtatggtggtgcaagtatatataaaaagcatccatttgaggggggcatacacaaatgaatggatggatgacccaca |
208 |
Q |
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| T |
53467020 |
tggtgagacaacatgtcctgttgagcatggtggtgcaagtatatataaaaagcatcaatttgagggg-gcatacacaaatgaatggatggatgacccaca |
53467118 |
T |
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| Q |
209 |
cttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatg |
308 |
Q |
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| T |
53467119 |
cttgagagggagattgttgtgtagcaagtgtgaggtagaagtccaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatg |
53467218 |
T |
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| Q |
309 |
ccttatgattttgaatgaaaatgtgatgtccatctcat |
346 |
Q |
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| T |
53467219 |
ccttaagattttgaatgaaaatgtggtgtccaactcat |
53467256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 45636047 - 45635976
Alignment:
| Q |
179 |
atacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
250 |
Q |
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| T |
45636047 |
atacccaaatgaatggatggatgactcacacttgagagggagattgttgtgtaccaagtgtgagatagaagt |
45635976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 13154560 - 13154520
Alignment:
| Q |
210 |
ttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
250 |
Q |
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| T |
13154560 |
ttgagaggaagattgttgtgtagcaagtatgagttagaagt |
13154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 42730284 - 42730342
Alignment:
| Q |
199 |
atgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacat |
257 |
Q |
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| T |
42730284 |
atgactcacacttgaggggaagattgttgtgtagcaagtctgagttagaagttccacat |
42730342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 28483750 - 28483780
Alignment:
| Q |
220 |
gattgttgtgtagcaagtgtgaggtagaagt |
250 |
Q |
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| T |
28483750 |
gattgttgtgtagcaagtgtgaggtagaagt |
28483780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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