View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_29 (Length: 350)
Name: NF7863_high_29
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 340
Target Start/End: Original strand, 43607509 - 43607846
Alignment:
| Q |
4 |
tatgaactctgagactcagcaatacacaaatcagtcttgggtttctacctagtagatatagcatttatgagaatttctctttgacattattattggcgcc |
103 |
Q |
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| T |
43607509 |
tatgaactctgagactcagcaatacacaaatcagtcttgggtttctacctagtagatatagcatttatgagaatttctctttgacattattattggcgcc |
43607608 |
T |
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| Q |
104 |
tcttcgaccaagtggttgggagtttaaccaatgtcaaccccatctttggaatgaaattaagtacttaagcctaagaatatcataaatcggcattagcaaa |
203 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43607609 |
tcttcgaccaagtggttgggagtttaaccattgtcaaccccatctttggaatgaaattaagtacttaagcctaagaatatcataaatcagcattagcaaa |
43607708 |
T |
|
| Q |
204 |
gtttgcattgtctatgcttgaagccgcccaaagggacc-ttgtagaagagggcgtgctggataaataaaacccaattcataggcttatataataacttaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607709 |
gtttgcattgtctatgcttgaagccgcccaaagggacctttttagaagagggcgtgctggataaataaaacccaattcataggcttatataataacttaa |
43607808 |
T |
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| Q |
303 |
catgtaaggagagttggtgttgggaatgttaatgatgt |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43607809 |
catgtaaggagagttggtgttgggaatgttaatgatgt |
43607846 |
T |
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