View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_high_3 (Length: 651)

Name: NF7863_high_3
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_high_3
NF7863_high_3
[»] chr4 (1 HSPs)
chr4 (2-639)||(45284500-45285137)


Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 2 - 639
Target Start/End: Complemental strand, 45285137 - 45284500
Alignment:
Q  2 tcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaattccatttctaatctatcaatgcaagaagatt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285137 tcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaattccatttctaatctatcaatgcaagaagatt 45285038  T
Q  102 gatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaatcctcagataaagtgagtgtttcatcaaccat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45285037 gatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaatcctcggataaagtgagtgtttcatcaaccat 45284938  T
Q  202 ttgtttattttgcaatccatgcagcatatctatattctttctcatatctaccatctcttgttgcgcttgatcattatcttttgtagctaattgaatttcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284937 ttgtttattttgcaatccatgcagcatatctatattctttctcatatctactatctcttgttgcgcttgatcattatcttttgtagctaattgaatttcc 45284838  T
Q  302 tcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtgaacacgttcattaagctcatttacttgatgca 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284837 tcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtgaacacgttcattaagctcatttacttgatgca 45284738  T
Q  402 gaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagcattcaattctgaatctctagcagcaaaaatatc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284737 gaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagcattcaattctgaatctctagcagcaaaaatatc 45284638  T
Q  502 agtatctttgttcagaagctctctttgtgtggccttcaattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagcc 601  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284637 agtatctttgttcagaagctctctttgtgtggacttcaattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagcc 45284538  T
Q  602 atctctttcatcattgattcaagctcgtctctgctact 639  Q
    |||||||||||||||||||||||||||||| |||||||    
T  45284537 atctctttcatcattgattcaagctcgtctttgctact 45284500  T

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