View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_4 (Length: 644)
Name: NF7863_high_4
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 72 - 452
Target Start/End: Complemental strand, 14490619 - 14490239
Alignment:
| Q |
72 |
gagtgtattttctcaagcgacaacattggaagtcaatgcttaaccactgattttcagtaccacttcaataaagagaatgctgtgtatctgaatctgtact |
171 |
Q |
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| T |
14490619 |
gagtgtattttctcaagcgacaacattggaagtcaatgcttaaccactgattttcagtaccacttcaataaagagaatgctgcgtatctgaatctgtact |
14490520 |
T |
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| Q |
172 |
ttgatgatatgaatttttcggtgaaatgccctgattcttaaacagagtttccttaacgagtgcagcctcagtaggcattccagatttcaaaagacaggaa |
271 |
Q |
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| T |
14490519 |
ttgatgatatgaatttttcggtgaactgccttgattcttaaacagaatttccttaacgcgtgcagcctcggtaggcattccagatttcaaaagacaggaa |
14490420 |
T |
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| Q |
272 |
cttaaagttctaatagtgacgtcatctggggaacaaccggtggccaacatcttgtaaaagatacctattgcttcgggcgctcttcctttcatacaatgac |
371 |
Q |
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| T |
14490419 |
cttaaagttctaatagtaacatcatctggggaacaaccggtcgccaacatcctgtaaaagataccaattgcttcgtacgctcttcctttcatacaatgac |
14490320 |
T |
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| Q |
372 |
caataataagaatagtaaatgtcagtttatcaggtttgcatttcttttccatatctacaacaattgcattatccttatcaa |
452 |
Q |
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| T |
14490319 |
caataataagaatagtaaatgtcagtttatcaggtttgcatttcttttccatatctacaacaattgcattagcctcatcaa |
14490239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 411
Target Start/End: Complemental strand, 18321075 - 18320978
Alignment:
| Q |
314 |
gccaacatcttgtaaaagatacctattgcttcgggcgctcttcctttcatacaatgaccaataataagaatagtaaatgtcagtttatcaggtttgca |
411 |
Q |
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| T |
18321075 |
gccaacattttatcaaagataccaattgcttcggccattctccctttcgaacaatgcccaataataagaatggtatatgtcaacttatcaggcttgca |
18320978 |
T |
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