View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_48 (Length: 241)
Name: NF7863_high_48
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 21077996 - 21078238
Alignment:
| Q |
11 |
catcatcatcacgatcatgaagaaacatttttctcatcgttcttgttacgacaaccataaacaacaacaacaaaagaaagaatatgatcac--------- |
101 |
Q |
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| T |
21077996 |
catcatcatcacgatcatgaagaaacatttttctcttcgttcttgttacgacaaccataaacaacaacatcaaaagaaagaatatgatcaccatgatgct |
21078095 |
T |
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| Q |
102 |
---gatgagcagaaaaagaatattggttgtttaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggtggcc |
198 |
Q |
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| T |
21078096 |
actgatgatcagaaaaagaatattggttgttcaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggcggcc |
21078195 |
T |
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| Q |
199 |
acaaatcacatcaccaccgctctgatcaccttgttcaacaacc |
241 |
Q |
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| T |
21078196 |
acaaatcacatcaccaccgctctgatcaccttgttcaacaacc |
21078238 |
T |
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