View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_high_6 (Length: 614)

Name: NF7863_high_6
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_high_6
NF7863_high_6
[»] chr3 (7 HSPs)
chr3 (229-569)||(46864549-46864888)
chr3 (11-167)||(46864385-46864541)
chr3 (1-48)||(25181306-25181353)
chr3 (1-46)||(5045971-5046016)
chr3 (1-53)||(5407038-5407091)
chr3 (1-46)||(41459297-41459342)
chr3 (1-53)||(52736860-52736912)
[»] chr7 (6 HSPs)
chr7 (1-51)||(38494319-38494369)
chr7 (1-54)||(32683720-32683773)
chr7 (1-55)||(40728796-40728850)
chr7 (1-45)||(2839408-2839452)
chr7 (1-49)||(33936764-33936812)
chr7 (1-45)||(44391233-44391277)
[»] chr4 (8 HSPs)
chr4 (1-51)||(5025610-5025660)
chr4 (1-46)||(5835831-5835876)
chr4 (1-49)||(46958090-46958138)
chr4 (1-52)||(1589575-1589626)
chr4 (8-53)||(20191654-20191699)
chr4 (1-53)||(22694549-22694601)
chr4 (1-49)||(22980673-22980721)
chr4 (6-50)||(38305206-38305250)
[»] chr1 (5 HSPs)
chr1 (1-43)||(31957904-31957946)
chr1 (3-49)||(36447634-36447680)
chr1 (1-50)||(4347094-4347143)
chr1 (1-46)||(43541582-43541627)
chr1 (1-53)||(7765237-7765289)
[»] chr8 (5 HSPs)
chr8 (10-54)||(32597855-32597899)
chr8 (1-49)||(41891776-41891824)
chr8 (1-46)||(35550325-35550370)
chr8 (1-45)||(20169523-20169567)
chr8 (1-49)||(29970906-29970954)
[»] chr2 (2 HSPs)
chr2 (1-48)||(29844267-29844314)
chr2 (3-49)||(5055276-5055322)
[»] chr5 (3 HSPs)
chr5 (1-46)||(3747547-3747592)
chr5 (1-49)||(31215329-31215377)
chr5 (1-49)||(43152317-43152365)
[»] chr6 (3 HSPs)
chr6 (1-49)||(4911060-4911108)
chr6 (9-41)||(7378773-7378805)
chr6 (1-49)||(8551049-8551097)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 229 - 569
Target Start/End: Original strand, 46864549 - 46864888
Alignment:
Q  229 ttgaacatcatatacgtgtgatagacatatatttctaacacctttaaatttaaatgaagatccattatcaatccacttgtatggttgatcaaaatctaac 328  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  46864549 ttgaacatcatatacatgtgat-gacatatatttctaacacctttaaatttaaatgaagatccgttatcaatctacttgtatggttgatcaaaatctaac 46864647  T
Q  329 acaattattatcatacttcttatgactcaacaaatatgaatagtataacaatgtaataaaaaagaggtgctcaaattctcaatatacggtccaaagtact 428  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  46864648 acaattattctcatacttcttatgactcaacaaatattaatagtataacaatgtaataaaaaaaaggtgctcaaattctcaatatacggtccaaattact 46864747  T
Q  429 tcaagacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtggataacatttcagtgacattgaggtgc 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||    
T  46864748 tcaagacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtgggtaatattttggtgacattgaggtgc 46864847  T
Q  529 taatatcatgtgtcattgatcaactataacatcacaagtgt 569  Q
     ||||||||||| |||| |||||||||||||||||||||||    
T  46864848 caatatcatgtgacattaatcaactataacatcacaagtgt 46864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 46864385 - 46864541
Alignment:
Q  11 caaaatcaatttttgccaccacataaccaaacacacgcttagtgttgtgagtaagagtatcacacaggatggaaaaatggattgttggatcatgaaagga 110  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46864385 caaaatcaattttcgccaccacgtaaccaaacacacgcttagtgttctgagtaagagtatcacacaggatggaaaaatggattgttggatcatgagagga 46864484  T
Q  111 attaaggtgaccacgagttcatgggaactaaaagattgaatatgtgtcatccataac 167  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  46864485 attaaggtgaccatgagttcatgagaactaaaacattgaatatgtgtcatccataac 46864541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25181306 - 25181353
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgc 48  Q
    ||||||||||||| ||||||| | |||||| |||||||||||||||||    
T  25181306 tcaattcaatcaatatcaattctagccaccgcataaccaaacacacgc 25181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5046016 - 5045971
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    ||||||||||||||| ||||||  ||||||||| ||||||||||||    
T  5046016 tcaattcaatcaaaaacaatttccgccaccacaaaaccaaacacac 5045971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5407038 - 5407091
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgc-caccacataaccaaacacacgcttagt 53  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| || ||||||    
T  5407038 tcaattcactcaaaatcaattttttctcaccacataaccaaacatacacttagt 5407091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41459297 - 41459342
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    ||||||||||||||||||||||| | ||||| | ||||||||||||    
T  41459297 tcaattcaatcaaaatcaattttcgtcaccatagaaccaaacacac 41459342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52736860 - 52736912
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttagt 53  Q
    ||||||||| |||||||||||| |  |||  ||||||||||||||||||||||    
T  52736860 tcaattcaaccaaaatcaatttctttcactgcataaccaaacacacgcttagt 52736912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38494319 - 38494369
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgctta 51  Q
    ||||||||| ||||||||||||| |||||| || |||||||||||||||||    
T  38494319 tcaattcaaacaaaatcaattttcgccaccgcacaaccaaacacacgctta 38494369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32683720 - 32683773
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttagtg 54  Q
    |||||||||||||||||||||||| ||||  || ||||||||||| ||||||||    
T  32683720 tcaattcaatcaaaatcaatttttcccactgcacaaccaaacacatgcttagtg 32683773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40728796 - 40728850
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttagtgt 55  Q
    ||||||||||||||| ||||||||| | ||||| || ||||||||| ||||||||    
T  40728796 tcaattcaatcaaaagcaatttttgtccccacaaaatcaaacacacacttagtgt 40728850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2839408 - 2839452
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacaca 45  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||    
T  2839408 tcaattcaatcataatcaattttcgtcaccgcataaccaaacaca 2839452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33936812 - 33936764
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| | |||||||||||||| ||||| || |||||||||||||||    
T  33936812 tcaattctaccaaaatcaattttttccaccgcacaaccaaacacacgct 33936764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44391233 - 44391277
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacaca 45  Q
    |||||||| ||||||| |||||| ||||||||| |||||||||||    
T  44391233 tcaattcattcaaaataaattttcgccaccacaaaaccaaacaca 44391277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5025610 - 5025660
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgctta 51  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||| ||||    
T  5025610 tcaattcaatcaaaatcaattttagtcaccgcataaccaaacacacactta 5025660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5835831 - 5835876
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||    
T  5835831 tcaattcaatcaaaatcaattttcgtcacaacataaccaaacacac 5835876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46958090 - 46958138
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| |||||||||||||||| ||||| || |||||||||||||||    
T  46958090 tcaattctatcaaaatcaattttttccaccgcacaaccaaacacacgct 46958138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1589626 - 1589575
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttag 52  Q
    ||||||||| |||||||||||||  ||||| |||||||||||||| ||||||    
T  1589626 tcaattcaaccaaaatcaattttctccaccgcataaccaaacacatgcttag 1589575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 20191699 - 20191654
Alignment:
Q  8 aatcaaaatcaatttttgccaccacataaccaaacacacgcttagt 53  Q
    ||||||||||||||||||||||| || || ||||||||| ||||||    
T  20191699 aatcaaaatcaatttttgccaccgcagaatcaaacacacacttagt 20191654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22694601 - 22694549
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttagt 53  Q
    ||||||| | ||||||||||| || ||||| || |||||||||||||||||||    
T  22694601 tcaattctaccaaaatcaattctttccaccgcacaaccaaacacacgcttagt 22694549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22980721 - 22980673
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| | ||||||||||||||  ||||||| |||||||||||||||    
T  22980721 tcaattctaccaaaatcaatttttttcaccacacaaccaaacacacgct 22980673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 38305250 - 38305206
Alignment:
Q  6 tcaatcaaaatcaatttttgccaccacataaccaaacacacgctt 50  Q
    ||||||||||||||||||  ||||| || ||||||||||||||||    
T  38305250 tcaatcaaaatcaattttctccaccgcagaaccaaacacacgctt 38305206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31957946 - 31957904
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaaca 43  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  31957946 tcaattctatcaaaatcaatttttgccaccatataaccaaaca 31957904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 36447680 - 36447634
Alignment:
Q  3 aattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    |||||||||||||||||||||  || ||||| |||||||||||||||    
T  36447680 aattcaatcaaaatcaattttcaccgccacagaaccaaacacacgct 36447634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4347094 - 4347143
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgctt 50  Q
    ||||||| | |||||||||||||| ||||| || ||||||||||||||||    
T  4347094 tcaattctaccaaaatcaattttttccaccgcacaaccaaacacacgctt 4347143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43541627 - 43541582
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    |||||||| ||| |||||||||||| |||| |||||||||||||||    
T  43541627 tcaattcattcagaatcaatttttgtcaccgcataaccaaacacac 43541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7765289 - 7765237
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgcttagt 53  Q
    ||||||| ||||||||||||| | | |||| ||||||||||||||| ||||||    
T  7765289 tcaattctatcaaaatcaattctcgtcaccgcataaccaaacacacacttagt 7765237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 32597899 - 32597855
Alignment:
Q  10 tcaaaatcaatttttgccaccacataaccaaacacacgcttagtg 54  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  32597899 tcaaactcaatttttgccaccgcataaccaaacacacgcgtagtg 32597855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41891824 - 41891776
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    |||||||||||||||| |||||| | |||| ||||||||||||||||||    
T  41891824 tcaattcaatcaaaattaattttagtcaccgcataaccaaacacacgct 41891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35550325 - 35550370
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    ||||||||||||||||||||||| |||||| || || |||||||||    
T  35550325 tcaattcaatcaaaatcaattttcgccaccgcaaaatcaaacacac 35550370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20169523 - 20169567
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacaca 45  Q
    |||||||| ||||||| |||||| ||||||||| |||||||||||    
T  20169523 tcaattcattcaaaataaattttcgccaccacaaaaccaaacaca 20169567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29970906 - 29970954
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| |||||||||||||||| | ||| |||| |||||||||||||    
T  29970906 tcaattctatcaaaatcaatttttactaccgcatagccaaacacacgct 29970954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29844267 - 29844314
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgc 48  Q
    ||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  29844267 tcaattctaccaaaatcaattttttccaccacacaaccaaacacacgc 29844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5055276 - 5055322
Alignment:
Q  3 aattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||||||||||||| |||||||||| | ||| ||||||||||||    
T  5055276 aattcaatcaaaatcaaattttgccaccgcgtaatcaaacacacgct 5055322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3747592 - 3747547
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacac 46  Q
    ||||||| ||||||||||||||||  |||| |||||||||||||||    
T  3747592 tcaattctatcaaaatcaatttttatcaccgcataaccaaacacac 3747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31215377 - 31215329
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    |||||||||||||||| |||||| | |||| ||||| ||||||||||||    
T  31215377 tcaattcaatcaaaataaattttagtcaccgcataatcaaacacacgct 31215329  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43152365 - 43152317
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||||| ||||||||||| ||  |||| ||||||||||||||||||    
T  43152365 tcaattcaaacaaaatcaattatttgcaccgcataaccaaacacacgct 43152317  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4911060 - 4911108
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| |||||||||||||||  | |||| |||||||||||||||||    
T  4911060 tcaattctatcaaaatcaattttctcaaccatataaccaaacacacgct 4911108  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 7378773 - 7378805
Alignment:
Q  9 atcaaaatcaatttttgccaccacataaccaaa 41  Q
    ||||||||||||||||| |||||||||||||||    
T  7378773 atcaaaatcaatttttgtcaccacataaccaaa 7378805  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8551097 - 8551049
Alignment:
Q  1 tcaattcaatcaaaatcaatttttgccaccacataaccaaacacacgct 49  Q
    ||||||| ||||||||||||| |  |||||||| |||||||||||||||    
T  8551097 tcaattctatcaaaatcaattatatccaccacacaaccaaacacacgct 8551049  T

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