View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_high_61 (Length: 215)
Name: NF7863_high_61
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 13447078 - 13447250
Alignment:
| Q |
20 |
atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga |
119 |
Q |
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| T |
13447078 |
atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga |
13447177 |
T |
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| Q |
120 |
gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatc |
192 |
Q |
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| T |
13447178 |
gtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatc |
13447250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 13419527 - 13419699
Alignment:
| Q |
20 |
atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga |
119 |
Q |
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| T |
13419527 |
atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgact |
13419626 |
T |
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| Q |
120 |
gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatc |
192 |
Q |
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| T |
13419627 |
gtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatc |
13419699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 13426418 - 13426590
Alignment:
| Q |
20 |
atcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccattgaatgtttga |
119 |
Q |
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| T |
13426418 |
atcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaact |
13426517 |
T |
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| Q |
120 |
gtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatc |
192 |
Q |
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| T |
13426518 |
gtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatc |
13426590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 13413183 - 13413265
Alignment:
| Q |
21 |
tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt |
103 |
Q |
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| T |
13413183 |
tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatactt |
13413265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
| Q |
24 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat |
78 |
Q |
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| T |
13454035 |
ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat |
13454089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 13393628 - 13393562
Alignment:
| Q |
19 |
catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat |
85 |
Q |
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| T |
13393628 |
catcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat |
13393562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 47601348 - 47601427
Alignment:
| Q |
19 |
catcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga |
98 |
Q |
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| T |
47601348 |
catcgggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga |
47601427 |
T |
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