View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_101 (Length: 239)

Name: NF7863_low_101
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_101
NF7863_low_101
[»] scaffold0031 (1 HSPs)
scaffold0031 (17-223)||(106021-106227)
[»] chr2 (3 HSPs)
chr2 (16-221)||(6944428-6944633)
chr2 (17-219)||(32455013-32455214)
chr2 (18-162)||(36133323-36133467)
[»] chr6 (6 HSPs)
chr6 (59-223)||(35122145-35122309)
chr6 (59-223)||(33344580-33344744)
chr6 (17-214)||(13419530-13419733)
chr6 (16-140)||(2804979-2805104)
chr6 (16-68)||(33345033-33345085)
chr6 (16-68)||(35121813-35121865)
[»] chr7 (4 HSPs)
chr7 (26-221)||(1273868-1274063)
chr7 (31-218)||(34422809-34422996)
chr7 (150-223)||(15582070-15582143)
chr7 (112-165)||(8062243-8062296)
[»] chr1 (5 HSPs)
chr1 (27-221)||(44559763-44559956)
chr1 (16-221)||(35388926-35389131)
chr1 (115-203)||(27086385-27086472)
chr1 (35-221)||(9127161-9127347)
chr1 (62-142)||(38889713-38889792)
[»] chr5 (3 HSPs)
chr5 (16-221)||(35148108-35148313)
chr5 (46-142)||(12041663-12041759)
chr5 (16-138)||(25822333-25822455)
[»] chr3 (3 HSPs)
chr3 (17-221)||(13881278-13881482)
chr3 (119-217)||(24183609-24183707)
chr3 (62-148)||(29826251-29826336)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-219)||(243618-243821)
[»] chr8 (4 HSPs)
chr8 (16-189)||(34215592-34215771)
chr8 (93-191)||(27490608-27490706)
chr8 (163-221)||(40038620-40038678)
chr8 (46-94)||(23762015-23762063)
[»] chr4 (6 HSPs)
chr4 (52-215)||(6102624-6102780)
chr4 (60-199)||(51599582-51599721)
chr4 (78-144)||(41748939-41749005)
chr4 (32-94)||(38261214-38261276)
chr4 (115-218)||(38261102-38261206)
chr4 (86-137)||(3975995-3976046)


Alignment Details
Target: scaffold0031 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 106021 - 106227
Alignment:
Q  17 acatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgt 116  Q
    |||| ||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  106021 acattatgtgtaccgacctaacttctattaatattcactcttttgagcaccacattaatcgtcacatggttaattggaccccaccttcagatggatgtgt 106120  T
Q  117 taagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttct 216  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||  |    
T  106121 taagttgagtattgatggaagttgtggtgcttctggtgatattggttctagaggtttacttagtgataacaagggaaattggatagctggattctctaat 106220  T
Q  217 aatgatg 223  Q
    |||||||    
T  106221 aatgatg 106227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 6944428 - 6944633
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtg 115  Q
    ||||| |||| || ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||    
T  6944428 gacattatgtatatcgacctaacttctgttaatattcactcctctgagcaccacattaattgtcacatggttaaatggaccccaccactagatggatgtg 6944527  T
Q  116 ttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttc 215  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  6944528 ttaagttgaatattgttggaagttgtggtgcttctggtgacattggttctggaggtttacttcatgataacaagggaaattggatggctggattctcttc 6944627  T
Q  216 taatga 221  Q
    ||||||    
T  6944628 taatga 6944633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 32455214 - 32455013
Alignment:
Q  17 acatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgt 116  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| || ||||| |||| ||||||| ||||    
T  32455214 acatcatgtgtactgacctaacttctgttaatattcactcctctgagcaccacattaatcgtaacattgttaagtgaaccccgcctcaagatggaagtgt 32455115  T
Q  117 taagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttct 216  Q
    |||||||||||||||||||||||||||||| | | | || ||||||| ||| |||||| ||||||| ||||||||  |||| |||||||| |||||||||    
T  32455114 taagttgaatattgatggaagttgtggtgcct-tagggacattggttatggcggtttacttcgtgacaacaagggcgattgaatagctggtttctcttct 32455016  T
Q  217 aat 219  Q
    |||    
T  32455015 aat 32455013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 36133467 - 36133323
Alignment:
Q  18 catcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgtt 117  Q
    |||||||||||| | | |||| ||| |  ||||||||||||  |||||||| |||| | ||||||| ||| | |||||||  | || |||||||||||||    
T  36133467 catcatgtgtactggcgtaacatctgttgatattcactccttggagcaccatattatttgtcacattgttgagtggacccttcatcaagatggatgtgtt 36133368  T
Q  118 aagttgaatattgatggaagttgtggtgcttatggtgatattggt 162  Q
    ||||||||| |||||  ||||||| ||| || | |||| ||||||    
T  36133367 aagttgaattttgatataagttgttgtgattgtagtgacattggt 36133323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 35122145 - 35122309
Alignment:
Q  59 ctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgcttatggtgatat 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  ||||    
T  35122145 ctgagcaccacattaattgtcacatggttaattggaccccaccttcagatggatgtgttaagttgaatattgatggaagttgtggtgcttctggcaatat 35122244  T
Q  159 tggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatgatg 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35122245 tggttctggaggtttaattcgtgataacaagggaaattggatagttggattctcttctaatgatg 35122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 33344744 - 33344580
Alignment:
Q  59 ctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgcttatggtgatat 158  Q
    ||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  33344744 ctgagcacggcattaattgtcacatggttaattggaccccaccttcagatggatgtgttaagttgaatattgatggaagttgtggtgcttctggcgatat 33344645  T
Q  159 tggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatgatg 223  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33344644 tggttatggaggtttaattcgtgataacaagggaaattggatagttggattctcttctaatgatg 33344580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 13419733 - 13419530
Alignment:
Q  17 acatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgt 116  Q
    |||| ||| ||||||||||| ||| | | |||||||||| ||||||||||||||| ||| ||||||||||||| | ||||||||||| | ||||||||||    
T  13419733 acattatgcgtaccgacctagcttttattaatattcacttctctgagcaccacatcaattgtcacatggttaaatagaccccacctcaatatggatgtgt 13419634  T
Q  117 taagttgaatattgatggaagttgtggtgctt------atggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattc 210  Q
    ||||||||||||||| ||||||||||||||||        ||| | ||||||| |  ||||||| |||||| |||||||| ||||||||||| |||||||    
T  13419633 taagttgaatattgacggaagttgtggtgcttccggacccggtaacattggttgtcaaggtttacttcgtggtaacaaggaaaattggatagttggattc 13419534  T
Q  211 tctt 214  Q
    ||||    
T  13419533 tctt 13419530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 2804979 - 2805104
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattgga--ccccacctccagatggatg 113  Q
    ||||||||| ||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||| ||| |  |||  ||||||||| |||||||||    
T  2804979 gacatcatgcgtaccgacctaacttatgttaatattcactcttctgagcaccacattaatcgtcacattgtt-aggggaccccccacctcaagatggatg 2805077  T
Q  114 tgttaagttgaatattgatggaagttg 140  Q
    |||||||||||||||||| ||||||||    
T  2805078 tgttaagttgaatattgacggaagttg 2805104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 33345085 - 33345033
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcacca 68  Q
    ||||| |||| |||||||||||||||| ||||||||||||||||| |||||||    
T  33345085 gacattatgtttaccgacctaacttctatcaatattcactcctctaagcacca 33345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 35121813 - 35121865
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcacca 68  Q
    ||||| |||| |||||||||||||||| | |||||||||| ||||||||||||    
T  35121813 gacattatgtttaccgacctaacttctataaatattcactactctgagcacca 35121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 1273868 - 1274063
Alignment:
Q  26 gtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaa 125  Q
    ||||||||||||||| | | ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||    
T  1273868 gtaccgacctaacttatgttaatatccactcctctgaacaccacattaatcgtcacatggttaaatgaaccccacctcaagatggatgttttaagttgaa 1273967  T
Q  126 tattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatga 221  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  1273968 tattgatgaaagttgtggtgctttcggtgatattggttctggaggtttacttcgtgataacaagggaagttggatagctggaatctcttctaatga 1274063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 34422809 - 34422996
Alignment:
Q  31 gacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattg 130  Q
    |||||||||||| | ||||||||||||| | | |||||||| ||||||||||||||||| |||||| ||| |  | ||||||||||||||||||||||||    
T  34422809 gacctaacttcttttaatattcactcctttaaacaccacatcaatcgtcacatggttaaatggaccacactttaatatggatgtgttaagttgaatattg 34422908  T
Q  131 atggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaa 218  Q
    ||||||||| |||||||| ||| || |||||||||  ||||||| |||||||||| |||| ||||||||||||||| |||||||||||    
T  34422909 atggaagttttggtgcttctggcgacattggttctaaaggtttacttcgtgataaaaaggaaaattggatagctggtttctcttctaa 34422996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 15582070 - 15582143
Alignment:
Q  150 tggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatgatg 223  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15582070 tggtgatattggttttggaggtttacttcgtgataacaagggaaattggatagctggattctcttctaatgatg 15582143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 8062243 - 8062296
Alignment:
Q  112 tgtgttaagttgaatattgatggaagttgtggtgcttatggtgatattggttct 165  Q
    |||||||||||||||||||||| |||||||||||| |||||||| ||| |||||    
T  8062243 tgtgttaagttgaatattgatgaaagttgtggtgcctatggtgacattagttct 8062296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 44559763 - 44559956
Alignment:
Q  27 taccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaat 126  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44559763 taccgacctaacttctgttaatattaactcctctgagcaccacattaattatcacatggttaaatggaccccacctccagatggatgtgttaagttgaat 44559862  T
Q  127 attgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatga 221  Q
    ||||||| || |||||||||||  ||||| ||| ||||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||||||    
T  44559863 attgatgaaaattgtggtgcttccggtgacatt-gttctagaggtttacttcgtgataacaagaaaaataggatagctggattctcttctaatga 44559956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 35389131 - 35388926
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtg 115  Q
    ||||||||| |||  |||||||||||| | ||||||| ||| |||| |||||||||||||| | |||  ||||| | ||||| ||||| |||||| ||||    
T  35389131 gacatcatgcgtattgacctaacttctgttaatattctctcttctgtgcaccacattaatcataacaatgttaagtagaccctacctcaagatgggtgtg 35389032  T
Q  116 ttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttc 215  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||  |||||| ||||||| ||||||||  |||||||| |||| ||||||||    
T  35389031 ttaagttgaatattgatggaagttgtggtgcctctggtgacattggttctgacggtttacttcgtgacaacaagggtgattggataactggtttctcttc 35388932  T
Q  216 taatga 221  Q
    ||||||    
T  35388931 taatga 35388926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 27086385 - 27086472
Alignment:
Q  115 gttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagc 203  Q
    ||||| |||||||||||||||||||||| | |||  ||||| ||||||| |||| ||||| || |||||| ||||||||||||||||||    
T  27086385 gttaaattgaatattgatggaagttgtgattcttccggtgacattggttatgga-gtttattttgtgatagcaagggaaattggatagc 27086472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 9127347 - 9127161
Alignment:
Q  35 taacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatgg 134  Q
    |||||||| | ||||||  ||| | ||||||  |||||||| || |||| ||||| |||||||||| |  ||   ||||| ||| ||| |||||||||||    
T  9127347 taacttctgttaatatttgctcatgtgagcaagacattaattgtaacattgttaactggaccccactttaaggctgatgtcttatgttaaatattgatgg 9127248  T
Q  135 aagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatga 221  Q
    |||| ||||||||| || | | | ||||| ||| |||||| ||||||| |||||||   ||||||||| ||  ||||||| ||||||    
T  9127247 aagtagtggtgcttttgataacaatggttatggcggtttatttcgtgacaacaaggtcgattggatagttgatttctcttttaatga 9127161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 38889792 - 38889713
Alignment:
Q  62 agcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtg 142  Q
    ||||||| ||||||||||| || || || ||||| || | || ||||  ||||||||||||||||||||||| ||||||||    
T  38889792 agcaccaaattaatcgtcatatcgtaaaatggactcctc-tcaagataaatgtgttaagttgaatattgatgaaagttgtg 38889713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 35148313 - 35148108
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtg 115  Q
    ||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||| |||||||||||| ||||| | ||||||||||| | ||||||| |    
T  35148313 gacattatgtgtaccgacctaacttctgttaatatttactcctccgagcaccacactaatcgtcacattgttaaatagaccccacctcaatatggatgcg 35148214  T
Q  116 ttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttc 215  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||| |||| | |||||| || |||| ||||  ||| ||||||||| |||||| |||||    
T  35148213 ttaagttgaatattgatggaagttgtggtgattacggtgacattgattctagtggtttacttagtgacaacataggagattggatagatggattttcttc 35148114  T
Q  216 taatga 221  Q
    ||||||    
T  35148113 taatga 35148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 12041663 - 12041759
Alignment:
Q  46 aatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtg 142  Q
    ||||||| ||||  ||||||||||||||||||| |||| ||||| |||| |||||||  |||||||||||| |||||||||||||||||||||||||    
T  12041663 aatattcgctccgttgagcaccacattaatcgtaacattgttaagtggatcccacctgaagatggatgtgtgaagttgaatattgatggaagttgtg 12041759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 25822455 - 25822333
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtg 115  Q
    |||||||||  |||| || |||||||| | ||||||||||||| | | |||||||||||| |||||||  |||| ||||| ||||||| |||||||||      
T  25822455 gacatcatgcataccaacttaacttctattaatattcactcctataaacaccacattaattgtcacattattaagtggactccacctcaagatggatgca 25822356  T
Q  116 ttaagttgaatattgatggaagt 138  Q
    |||||||||||||| ||| ||||    
T  25822355 ttaagttgaatattcatgaaagt 25822333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 13881482 - 13881278
Alignment:
Q  17 acatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgt 116  Q
    |||| ||||||||| || |||||||| | ||||||||||||||| ||||||||||||||||  |||| ||||   |||||| ||||| |||||||||||     
T  13881482 acattatgtgtacccacataacttctattaatattcactcctctaagcaccacattaatcgaaacattgttagaaggaccctacctcaagatggatgtgc 13881383  T
Q  117 taagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttct 216  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||| ||| |||||| || |||| |||||| |||| ||||||| |||||||||||||    
T  13881382 taagttgaatattgatggaagttgtggtgcttccggtgacattggttttggtggtttactttgtgacaacaagagaaagtggatagttggattctcttct 13881283  T
Q  217 aatga 221  Q
    |||||    
T  13881282 aatga 13881278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 24183707 - 24183609
Alignment:
Q  119 agttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttcta 217  Q
    |||| |||||||||||||||||| ||  |   ||| | ||||||| | ||| |||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  24183707 agttaaatattgatggaagttgtagtattaccggtaacattggttttagagatttaattcgtgataacaaaggagattggatagcaggattctcttcta 24183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 29826336 - 29826251
Alignment:
Q  62 agcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgctt 148  Q
    |||| |||||||||| |||||| ||||| |||||||| | || ||||||||| || || |||||||||||||  |||||||||||||    
T  29826336 agcatcacattaatcttcacattgttaagtggacccc-cttcaagatggatgcgtaaaattgaatattgatgatagttgtggtgctt 29826251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 243618 - 243821
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtg 115  Q
    ||||| ||||||||| ||||||||||| | ||||||||||| ||||||||||||| |||| ||||||| ||||| |||||||| |||| |||||||||||    
T  243618 gacattatgtgtaccaacctaacttctgttaatattcactcttctgagcaccacactaattgtcacattgttaagtggacccctcctcaagatggatgtg 243717  T
Q  116 ttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttc 215  Q
    ||||||||||||||||||||||||||||| |||  || || |||| |||| | |||||| ||| ||| ||||| ||| |||||||||  |  ||||||||    
T  243718 ttaagttgaatattgatggaagttgtggtacttccggcgacattgtttctagcggtttacttcttgacaacaaaggagattggatagtagacttctcttc 243817  T
Q  216 taat 219  Q
    ||||    
T  243818 taat 243821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 34215771 - 34215592
Alignment:
Q  16 gacatcatgtgtaccgacctaacttctctcaatattcactcctctgagcaccacattaatc-----gtcacatggttaattgg-accccacctccagatg 109  Q
    ||||| |||||||| |||||||||||| | ||||||||||| | ||||||||||||||||      ||||||| ||||| ||| ||| |||||| |||||    
T  34215771 gacattatgtgtactgacctaacttctgttaatattcactcttatgagcaccacattaatttaatagtcacatagttaagtgggaccacacctcaagatg 34215672  T
Q  110 gatgtgttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaag 189  Q
    |||||||| ||||||| |||||||||||||||||| ||| |||||| |||| || ||| |||||| ||||| | ||||||    
T  34215671 gatgtgttgagttgaagattgatggaagttgtggtacttctggtgacattgattttggcggtttacttcgtaacaacaag 34215592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 27490706 - 27490608
Alignment:
Q  93 gaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgcttatggtgatattggttctggaggtttagttcgtgataacaaggg 191  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||||| ||| | | |||||| ||||| |||||||||||| ||||||| ||||||||    
T  27490706 gacctcacctcaagatggatgcgttaagttgaatattgatggaagttgcggtacctctggtgacattggctctggaggtttacttcgtgagaacaaggg 27490608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 40038678 - 40038620
Alignment:
Q  163 tctggaggtttagttcgtgataacaagggaaattggatagctggattctcttctaatga 221  Q
    |||||||||||| ||| ||| ||||||||  |||| |||||||| ||||||||||||||    
T  40038678 tctggaggtttacttcatgacaacaagggcgattgaatagctggtttctcttctaatga 40038620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 23762015 - 23762063
Alignment:
Q  46 aatattcactcctctgagcaccacattaatcgtcacatggttaattgga 94  Q
    ||||||||||||| |||||||||||||||| |||| || ||||| ||||    
T  23762015 aatattcactcctatgagcaccacattaattgtcatattgttaaatgga 23762063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 6102624 - 6102780
Alignment:
Q  52 cactcctctgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgcttatg 151  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||| | ||  |||| ||||  |||       ||||||||||||||||||||| | ||    
T  6102624 cactcctctgagcaccacattaatcgtcacaatgttaagtggaccctatcttaagatcgatgcatta-------tattgatggaagttgtggtgcctctg 6102716  T
Q  152 gtgatattggttctggaggtttagttcgtgataacaagggaaattggatagctggattctcttc 215  Q
    | ||||||| ||||||  ||||| ||||||||||||||||| |||||||| |||  ||||||||    
T  6102717 gggatattgattctggcagtttacttcgtgataacaagggagattggatacctgacttctcttc 6102780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 51599721 - 51599582
Alignment:
Q  60 tgagcaccacattaatcgtcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggtgcttatggtgatatt 159  Q
    |||||||||||||||  |  |||| ||||| ||||||||||||| |||||||||   ||||||||| ||||||| |||||||||| ||| |||||| |||    
T  51599721 tgagcaccacattaactgctacattgttaagtggaccccacctcaagatggatgcaataagttgaacattgatgaaagttgtggtacttttggtgacatt 51599622  T
Q  160 ggttctggaggtttagttcgtgataacaagggaaattgga 199  Q
    |||| ||  | |||| ||||||| ||||||| ||||||||    
T  51599621 ggttatgacgatttatttcgtgacaacaaggaaaattgga 51599582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 41748939 - 41749005
Alignment:
Q  78 tcacatggttaattggaccccacctccagatggatgtgttaagttgaatattgatggaagttgtggt 144  Q
    |||||| ||||| |||||| |||||| | |||||||| |||||||||||||||||||||||||||||    
T  41748939 tcacattgttaagtggaccacacctcaaaatggatgtattaagttgaatattgatggaagttgtggt 41749005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 38261276 - 38261214
Alignment:
Q  32 acctaacttctctcaatattcactcctctgagcaccacattaatcgtcacatggttaattgga 94  Q
    ||||||||| | | |||||||||| || |||||||||||||||||||||||| ||||| ||||    
T  38261276 acctaacttttgttaatattcacttctttgagcaccacattaatcgtcacattgttaaatgga 38261214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 38261206 - 38261102
Alignment:
Q  115 gttaagttgaatattgatggaagttgtggtgcttatggtgatattggttc-tggaggtttagttcgtgataacaagggaaattggatagctggattctct 213  Q
    ||||||||||||||| ||  ||||||||||||||  | ||| |||| ||  ||| |||||| ||||||| ||||| | |||||| || ||||||||||||    
T  38261206 gttaagttgaatattaattaaagttgtggtgcttccgatgacattgatttatggtggtttacttcgtgacaacaatgaaaattgaatggctggattctct 38261107  T
Q  214 tctaa 218  Q
    |||||    
T  38261106 tctaa 38261102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 3975995 - 3976046
Alignment:
Q  86 ttaattggaccccacctccagatggatgtgttaagttgaatattgatggaag 137  Q
    |||| ||||| ||||||| | |||||||||||||||||||||||||| ||||    
T  3975995 ttaagtggactccacctcaaaatggatgtgttaagttgaatattgattgaag 3976046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University