View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_104 (Length: 235)
Name: NF7863_low_104
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 25679589 - 25679789
Alignment:
| Q |
19 |
acttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggagtccaacgtagcctaggaaacttggatctaacataagg |
118 |
Q |
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| T |
25679589 |
acttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggagtccaacgtagcctaggaaacttggatctaacataagg |
25679688 |
T |
|
| Q |
119 |
tctcactgatgatttcttctcacaattctcttctattgtactattgcttgagcttattcctccattgttgatgttttgcttattactttcctcatcttca |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25679689 |
tctcaccgatgatttcttctcacaattctcttctattgtactattgcttgagcttattcctccattgttgatgttttgcttattactttcctcatcttca |
25679788 |
T |
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| Q |
219 |
t |
219 |
Q |
| |
|
| |
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| T |
25679789 |
t |
25679789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4926763 - 4926864
Alignment:
| Q |
20 |
cttactctcttgtccaccaagtctttgcacagcatgaagaaaacgaaaatgaagatcaggagtccaacgtagcctaggaaacttggatctaacataaggt |
119 |
Q |
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|||||| ||| | ||||||||||||| |||||||| | |||| | |||||| ||||||||||| | || |||||| | |||||||||||||||| || |
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| T |
4926763 |
cttactttctagaccaccaagtctttcaacagcatgcaaaaaagaatgatgaagctcaggagtccaccttaacctaggcatcttggatctaacataatgt |
4926862 |
T |
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| Q |
120 |
ct |
121 |
Q |
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|| |
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| T |
4926863 |
ct |
4926864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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