View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_109 (Length: 225)
Name: NF7863_low_109
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_109 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 7727468 - 7727263
Alignment:
| Q |
4 |
ggccccaacggccgcctctccgactgggacaacagtacagactgttgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccg |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||| |
|
|
| T |
7727468 |
ggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacctggccgaatcaccg |
7727369 |
T |
|
| Q |
104 |
ttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaa |
203 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727368 |
tcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctctcattggctgaaatgcccaa |
7727269 |
T |
|
| Q |
204 |
agtaac |
209 |
Q |
| |
|
|||||| |
|
|
| T |
7727268 |
agtaac |
7727263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 7731628 - 7731421
Alignment:
| Q |
4 |
ggccccaacggccgcctctccgactgggacaacagtacagactgttgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccg |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |||||| |
|
|
| T |
7731628 |
ggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccg |
7731529 |
T |
|
| Q |
104 |
ttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaa |
203 |
Q |
| |
|
| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
7731528 |
tcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctctcattagccgaaatgccgaa |
7731429 |
T |
|
| Q |
204 |
agtaactg |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
7731428 |
agtaactg |
7731421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 7739786 - 7739579
Alignment:
| Q |
4 |
ggccccaacggccgcctctccgactgggacaacagtacagactgttgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccg |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |||||| |
|
|
| T |
7739786 |
ggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccg |
7739687 |
T |
|
| Q |
104 |
ttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaa |
203 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7739686 |
tcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctctcattggccgaaatgcccaa |
7739587 |
T |
|
| Q |
204 |
agtaactg |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
7739586 |
agtaactg |
7739579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7699606 - 7699399
Alignment:
| Q |
1 |
ggtggccccaacggccgcctctccgactgggacaacagtacagactgttgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtca |
100 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||| || || |||||| ||||||||||| ||||| ||||||| |||| ||||||||||||| |
|
|
| T |
7699606 |
ggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaatgttgt---gactggagcttcgtcggttgcggcagaccttatcctggccgagtca |
7699510 |
T |
|
| Q |
101 |
ccgttgtcaccataagccgtggctggggtctttcgggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcc |
200 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| | | ||||||||||| |||||||| |
|
|
| T |
7699509 |
ccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcattggccgaaatgcc |
7699410 |
T |
|
| Q |
201 |
caaagtaactg |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
7699409 |
gaaagtaactg |
7699399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 7713928 - 7713744
Alignment:
| Q |
24 |
cgactgggacaacagtacagactgttgtagcgactggagctttgtcgggtgcggcaaacctgcacctggccgagtcaccgttgtcaccataagccgtggc |
123 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||| ||| || || ||||||| |||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
7713928 |
cgactgggacaacaacactgaatgttgt---gactggaacttcgtaggttgcggcagaccttatcctggccgagtcaccggcgtcaccatcggccgtggc |
7713832 |
T |
|
| Q |
124 |
tggggtctttcgggtacgcttccagcagagtttggcgacctcccttatcttaacttcctctcattggctgaaatgcccaaagtaactg |
211 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||||||||| | | ||||||||||| |||||||| |||||||||| |
|
|
| T |
7713831 |
tggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcattggccgaaatgccgaaagtaactg |
7713744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University