View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_110 (Length: 225)
Name: NF7863_low_110
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_110 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 1625057 - 1625223
Alignment:
| Q |
37 |
acatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagcttcaaacaatcaccat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1625057 |
acatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaactagcttcaaacaatcaccat |
1625156 |
T |
|
| Q |
137 |
gaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1625157 |
gaaccgttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
1625223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 1608051 - 1608216
Alignment:
| Q |
38 |
catcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatg |
137 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
1608051 |
catcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatg |
1608150 |
T |
|
| Q |
138 |
aacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
203 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1608151 |
aaccgttttatgcacaaatgagttttgttgttgttgagaattttcttgtgcttctttttgcatggt |
1608216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 1631541 - 1631706
Alignment:
| Q |
38 |
catcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatg |
137 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
1631541 |
catcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatg |
1631640 |
T |
|
| Q |
138 |
aacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
203 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1631641 |
aaccgttttatgcaccaatgagttttgttgttgttgagaatttgcttgtgcttctttttgcatggt |
1631706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 10819001 - 10818839
Alignment:
| Q |
38 |
catcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatg |
137 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
10819001 |
catcatttggtgaacaatttttacttgcattgtttaagccttcaagtgtgcggttgagatgaaaaattgtattttcatatagcttcaaacaatcaccatg |
10818902 |
T |
|
| Q |
138 |
aacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
10818901 |
aaccgttttatgcaccgatgagttttgtt---gttgagaattttcatgtgcttctttttgcatggt |
10818839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 18785998 - 18786164
Alignment:
| Q |
37 |
acatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagcttcaaacaatcaccat |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||| ||| |
|
|
| T |
18785998 |
acatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtatggttgagatgaaaaattgtgttttcaaatagcttgaaacaatcagcat |
18786097 |
T |
|
| Q |
137 |
gaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggt |
203 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18786098 |
gaaccgttttatgcacggatgagttttgttgttgttgagaattatcttgtgcttctttttgcatggt |
18786164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University