View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_112 (Length: 222)
Name: NF7863_low_112
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_112 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37203000 - 37202780
Alignment:
| Q |
1 |
accttaaaaatttctcatttatcaaatagataaccaggtgataactatggtaacggtgagagtaggaatgataatataatattatccctatgtaaaaaca |
100 |
Q |
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| T |
37203000 |
accttaaaaatttctcatttatcaa-tagataaccaggtgataactatggtaacggtgagaataggaatgataatataatattatccctttgtaaaaaca |
37202902 |
T |
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| Q |
101 |
tttccttgaaggacaatattcatagcccatatcatgctcaaattaaggtggagatttctgaaaataattgaacaaataaattgagacagaaatgtcatta |
200 |
Q |
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| T |
37202901 |
tttccttgaaggacaatattcatagcccatatcatgctcaaattaaggtggagatttctgaaaataattgaacaaataaattgagacagaaatgtcatta |
37202802 |
T |
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| Q |
201 |
tttgaattttattgattaccat |
222 |
Q |
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||| |||||||||||||||||| |
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| T |
37202801 |
tttaaattttattgattaccat |
37202780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37204185 - 37204140
Alignment:
| Q |
1 |
accttaaaaatttctcatttatcaaatagataaccaggtgataacta |
47 |
Q |
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| T |
37204185 |
accttaaaaatttctcattgatc-aatagataaccacgtgataacta |
37204140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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