View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_16 (Length: 572)
Name: NF7863_low_16
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 36 - 529
Target Start/End: Complemental strand, 11440642 - 11440146
Alignment:
| Q |
36 |
cagattcctcctgcggatttagaagctgtgttaattttgcatcctgaaattgttgatgtcgccgttacagggtaagtatatgaacatttcatttatgtct |
135 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||| ||||||| |
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| T |
11440642 |
cagattcctcctgctgatttagaagctgttttaattttgcatcctgaaatagctgatgtcgccgttacagggtaagtatatgaaaacatcatgtatgtct |
11440543 |
T |
|
| Q |
136 |
tctaagatgcatctttagacatttaaatataagcgttttg--tcattttccatatcagtgccaaggatgaagaagctggggagattccagtggcatttgt |
233 |
Q |
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|||||| | ||||| | ||||||||||||| | | ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11440542 |
tctaaggtttctctttgggcatttaaatataa-catgttgcatcattttccacatcagtgcaaaggatgaagaagctggggagattccagtggcatttgt |
11440444 |
T |
|
| Q |
234 |
ggtcaagaaggttggaagtgtactttctccaaaggatgttatcgatttcattgctaagcaggttcttctttataagaca----ttagttctatgatattt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| || |
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| T |
11440443 |
ggtcaagaaggttggaagtgtactttctccaaaggatgttatcgatttcgttgctaagcaggttcttcgttataagacagacatgagttctat-----tt |
11440349 |
T |
|
| Q |
330 |
gaattaatattactacttgaatcaattttagtattggaatggttttcaaattttaacc---tttttcatggcaggttgctccattcaagaaggttcgcaa |
426 |
Q |
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|||||||||| | ||||||||||||| |||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
11440348 |
gaattaatatcagtacttgaatcaatgttagcatttgaatggttttcaaattttaaccctttttttcttggcaggttgctccattcaagaaggttcgcaa |
11440249 |
T |
|
| Q |
427 |
agtggtcttcaccgacaagattccgaggtctgtgactgggaagatcctccgaaaggaactcagaaactgcttgccttctaaactctaagtcatttctttt |
526 |
Q |
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| T |
11440248 |
agtggtcttcaccgacaagattccgaggtctgtgactgggaagatactccgaaagcaactcagaaactgcttgccttctaaactctaaggcatttctttt |
11440149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 11451170 - 11450862
Alignment:
| Q |
23 |
acatgatcggttacagattcctcctgcggatttagaagctgtgttaattttgcatcctgaaattgttgatgtcgccgttacagggtaagta-------ta |
115 |
Q |
| |
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|||||||| ||||||||| ||||||| |||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||| ||||||| || |
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| T |
11451170 |
acatgatctattacagattgctcctgctgatttagaagctttgttaatttcgcatcctgaaatagttgatgccgccgttacagcgtaagtactaagtata |
11451071 |
T |
|
| Q |
116 |
tgaacatttcatttatgtctt------ctaagatgcatctttagacatttaaatataa----gcgttttg--tcattttccatatcagtgccaaggatga |
203 |
Q |
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|||||| || |||||||||| |||| ||| ||||| |||||| |||||| | | || || |||||||| ||||||||| ||||| ||| |
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| T |
11451070 |
tgaacactttgtttatgtctttgtcttctaaagtgcctctttggacattaaaatatgactttgagtattacatcattttcgatatcagtggcaaggttga |
11450971 |
T |
|
| Q |
204 |
agaagctggggagattccagtggcatttgtggtcaagaaggttggaagtgtactttctccaaaggatgttatcgatttcattgctaagcaggttcttctt |
303 |
Q |
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| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| || || |||| ||||||| | ||||||||||||||||||| |
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| T |
11450970 |
tgtagctggggagattccagtggcatttgtggtcaagaaagtcggaagtgtactttcttcacagcatgtgatcgattacgttgctaagcaggttcttctc |
11450871 |
T |
|
| Q |
304 |
tataagaca |
312 |
Q |
| |
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||||||||| |
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| T |
11450870 |
tataagaca |
11450862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 361 - 521
Target Start/End: Complemental strand, 11450826 - 11450660
Alignment:
| Q |
361 |
tattggaatggttttcaaattttaacc------tttttcatggcaggttgctccattcaagaaggttcgcaaagtggtcttcaccgacaagattccgagg |
454 |
Q |
| |
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||||||||||||||||| ||||||| | ||||| |||||||||||||||| ||| |||||||| |||||||||||||| |||||||| ||||| |
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| T |
11450826 |
tattggaatggttttcacattttaaaccttttattttttctggcaggttgctccatacaaaaaggttcggaaagtggtcttcacagacaagataccgaga |
11450727 |
T |
|
| Q |
455 |
tctgtgactgggaagatcctccgaaaggaactcagaaactgcttgccttctaaactctaagtcattt |
521 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||| || |||||| ||||||| |||| || ||||| |
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| T |
11450726 |
tctgcgactgggaaaatcctccgaaaggaactcaggaattgcttgacttctaagctctgaggcattt |
11450660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 521
Target Start/End: Original strand, 29914461 - 29914811
Alignment:
| Q |
179 |
ttttccatatcagtgccaaggatgaagaagctggggagattccagtggcatttgtggtcaagaaggttggaagtgtactttctccaaaggatgttatcga |
278 |
Q |
| |
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||||||||||||||||| | ||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || | |
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| T |
29914461 |
ttttccatatcagtgccgaagatgaagaaattggggaaattccagtggcgtttgttgtcaagaaggttggaagtgtactttctccgaaggatgtggtcaa |
29914560 |
T |
|
| Q |
279 |
tttcattgctaagcaggttcttcttt--ataagacatt----agttctatgatatttgaa-ttaatattactacttgaatcaattttagtattggaatgg |
371 |
Q |
| |
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|| ||||| |||||||| |||||| ||| ||||| |||| ||||||||||||| || |||||||||||||||||||| | | || |
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| T |
29914561 |
ttatgttgctgagcaggtttttcttttgataggacatacatgagttttatgatatttgaaattgatattactacttgaatcaatgtca---------tgc |
29914651 |
T |
|
| Q |
372 |
ttttcaaattttaacc--------tttttcat--ggcaggttgctccattcaagaaggttcgcaaagtggtcttcaccgacaagattccgaggtctgtga |
461 |
Q |
| |
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|||||| ||||||||| |||||| | ||||||||||||||| |||||| || || || ||| |||||||||||||||| || |||||| || |
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| T |
29914652 |
ttttcacattttaaccctttattttttttcttctggcaggttgctccatacaagaaagtccggaaggtgttcttcaccgacaagataccaaggtctccga |
29914751 |
T |
|
| Q |
462 |
ctgggaagatcctccgaaaggaactcagaaactgcttgccttctaaactctaagtcattt |
521 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
29914752 |
ctgggaagatcctccgaaagcaactcaggcactgcttgacttctaaactctaaggcattt |
29914811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 29914255 - 29914371
Alignment:
| Q |
21 |
acacatgatcggttacagattcctcctgcggatttagaagctgtgttaattttgcatcctgaaattgttgatgtcgccgttacagggtaagtatatgaac |
120 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||| || ||||||| |||||||||||||| |
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| T |
29914255 |
acacatgatctgttacagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagctgttacagcgtaagtatatgaac |
29914354 |
T |
|
| Q |
121 |
atttcatttatgtcttc |
137 |
Q |
| |
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| ||||||||||||||| |
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|
| T |
29914355 |
acttcatttatgtcttc |
29914371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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