View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_17 (Length: 559)
Name: NF7863_low_17
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_17 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 24851821 - 24852364
Alignment:
| Q |
16 |
caaccttgatatttaaaaacatcgaaatagaggcgtcaaggtcttattcacacaagggtggtcggccaagaaaacaactatttattgacctttgacagct |
115 |
Q |
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| T |
24851821 |
caaccttgatatttaaaaacatcgaaatagaggcgtcaaggtcttattcacacaagggtggtcggccaagaaaacaactattcattgacctttgacagct |
24851920 |
T |
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| Q |
116 |
ttcacatgaacaatccaacaatctaattttatagccataaaaagaagtaaaaggggaaggatcccaacaatcgcagcgaatgacttccaaaggcttggta |
215 |
Q |
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| T |
24851921 |
ttcacatgaacaatccaacaatctaattttatagccataagaagaagtaaaaggggaaggatcccaacaatcgcagcgaatgacttccaaaggcttggta |
24852020 |
T |
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| Q |
216 |
taaacagtgagagatgaaagtgtgtctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaatttta |
315 |
Q |
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| T |
24852021 |
taaacagtgagagatgaaagtgtatctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaatttta |
24852120 |
T |
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| Q |
316 |
cacattcaaaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtaagtgtgttggctaagatcaaagaagcaggactattattag |
415 |
Q |
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| T |
24852121 |
cacattcaaaatggattttacagcttgaggatgacctagtctaaggtttcccattgtgtgagtgtgttggctaagatcaaagaagcagtactactattag |
24852220 |
T |
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| Q |
416 |
tagaaccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatgcctgggattt |
515 |
Q |
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| T |
24852221 |
tagagccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatgcctgggattt |
24852320 |
T |
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| Q |
516 |
aataaaacacttctgagcatgaagttcaaacaaaacattatcgt |
559 |
Q |
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| T |
24852321 |
aataaaacacttctgagcatgaagttcaaacaaaacattatcgt |
24852364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 439 - 505
Target Start/End: Original strand, 24839872 - 24839938
Alignment:
| Q |
439 |
ttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatg |
505 |
Q |
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| T |
24839872 |
ttgaaaggcttgaacttgtataggccatctaaaccaactgcaccttcaaggagcacctgattagatg |
24839938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 24848018 - 24848140
Alignment:
| Q |
196 |
tgacttccaaaggcttggtataaacagtgagagatgaaagtgtgtctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggt |
295 |
Q |
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| T |
24848018 |
tgactttcaaaggcttggtataaacagtgaaagatgaaagtgcatgtaa-tttatatgattttcctatacaacaagaagagaaacattccaagctttggt |
24848116 |
T |
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| Q |
296 |
tagttggaaaaggaattttacaca |
319 |
Q |
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| T |
24848117 |
tacttggcaaacaaattttacaca |
24848140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 24839604 - 24839711
Alignment:
| Q |
246 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacac----attcaaaatggattttacagctt |
341 |
Q |
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| T |
24839604 |
tttatctgatttccctatacagcaagatgtgcaacattctaagttttgcttacttggcaaaggaattttacacacaaattcaaaatggattttactgttt |
24839703 |
T |
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| Q |
342 |
gaggatga |
349 |
Q |
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| T |
24839704 |
gaggatga |
24839711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 24847665 - 24847717
Alignment:
| Q |
16 |
caaccttgatatttaaaaacatcgaaatagaggcgtcaaggtcttattcacac |
68 |
Q |
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| T |
24847665 |
caaccttgatatgtaaaaacattgaaatagaggcgtcgagctcttattcacac |
24847717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 24847737 - 24847783
Alignment:
| Q |
64 |
cacacaagggtggtcggccaagaaaacaactatttattgacctttga |
110 |
Q |
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| T |
24847737 |
cacacaagggtggtcgaccaagaaaacaactattgattggcctttga |
24847783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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