View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_2 (Length: 1026)

Name: NF7863_low_2
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_2
NF7863_low_2
[»] chr6 (6 HSPs)
chr6 (447-1007)||(14164124-14164688)
chr6 (139-395)||(14163873-14164129)
chr6 (17-112)||(14163751-14163846)
chr6 (431-483)||(2735125-2735177)
chr6 (370-457)||(34430449-34430536)
chr6 (625-691)||(13997251-13997317)
[»] chr1 (8 HSPs)
chr1 (370-485)||(24915011-24915126)
chr1 (625-691)||(35322353-35322419)
chr1 (370-485)||(3233975-3234090)
chr1 (413-485)||(2295134-2295206)
chr1 (305-351)||(27976511-27976558)
chr1 (370-485)||(49938742-49938857)
chr1 (431-485)||(42575429-42575483)
chr1 (368-465)||(473157-473253)
[»] chr4 (10 HSPs)
chr4 (370-457)||(17822853-17822940)
chr4 (370-457)||(55414408-55414495)
chr4 (390-485)||(25904183-25904278)
chr4 (370-485)||(50681049-50681164)
chr4 (625-691)||(6682780-6682846)
chr4 (391-485)||(24169279-24169373)
chr4 (291-348)||(3070083-3070141)
chr4 (391-485)||(13126536-13126630)
chr4 (446-491)||(2236935-2236980)
chr4 (372-485)||(21731616-21731729)
[»] chr2 (4 HSPs)
chr2 (359-485)||(43279487-43279615)
chr2 (414-482)||(41812055-41812123)
chr2 (625-694)||(26423239-26423308)
chr2 (432-485)||(36534825-36534878)
[»] chr5 (5 HSPs)
chr5 (625-691)||(33305024-33305090)
chr5 (372-485)||(29925838-29925951)
chr5 (368-420)||(32703301-32703353)
chr5 (431-485)||(3932636-3932690)
chr5 (431-485)||(16457939-16457993)
[»] chr3 (6 HSPs)
chr3 (625-691)||(31637603-31637669)
chr3 (371-485)||(39980725-39980839)
chr3 (374-485)||(22203429-22203539)
chr3 (375-485)||(21367667-21367777)
chr3 (371-519)||(584042-584191)
chr3 (625-690)||(6999533-6999598)
[»] chr8 (4 HSPs)
chr8 (370-485)||(29168017-29168132)
chr8 (370-476)||(29205803-29205908)
chr8 (390-457)||(31716215-31716282)
chr8 (375-420)||(42622891-42622936)
[»] scaffold0233 (1 HSPs)
scaffold0233 (629-694)||(19345-19411)
[»] chr7 (2 HSPs)
chr7 (371-485)||(19022545-19022659)
chr7 (293-349)||(46078051-46078108)
[»] scaffold0057 (1 HSPs)
scaffold0057 (435-485)||(24681-24731)


Alignment Details
Target: chr6 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 447 - 1007
Target Start/End: Original strand, 14164124 - 14164688
Alignment:
Q  447 taagctgttttgataagttatctcaaacagcctcacaaacttatggtaataaatgaattcaaataagtcaatctaaagcatggtgaaaaatttgagaaca 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164124 taagctgttttgataagttatctcaaacagcctcacaaacttatggtaataaatgaattcaaataagtcaatctaaagcatggtgaaaaatttgagaaca 14164223  T
Q  547 aatgtggtcttatctatcaatggtgatgggatgtggttgagaaaatctaaaattcttatagttggaccacaattgcagtagctaaattataagcaacacc 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164224 aatgtggtcttatctatcaatggtgatgggatgtggttgagaaaatctaaaattcttatagttggaccacaattgcagtagctaaattataagcaacacc 14164323  T
Q  647 gttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatcagtgagtagtaagtgtctacactcctttattacagccatatagtctgaaacaccg 746  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  14164324 gttgacctgtgtccgaatgaacttcacgtcaaagttcactaaatcagtgagtagtaagtgtctacaatcctttattacggccatatagtctgaaacaccg 14164423  T
Q  747 tcactgttgtcatttataccgt----caccgtttttgaatctgttcactagattgagatattttaccaatatctacatccagtaagggtgtaatccatta 842  Q
    |||||||||| |||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164424 tcactgttgtaatttatactgtcaaccaccgtttttgaatctgttcactagattgagatattttaccaatatctacatccagtaagggtgtaatccatta 14164523  T
Q  843 tgttttttatgatacaaactgtccctcgctatcccgaatgcatactccaatgcctacctcgttaagtgaatgtaagaaagatgcatctacattacatttg 942  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14164524 tgttttttatgatacaaactgtccctcgttatcccgaatgcatactccaatgtctacctcgttaagtgaatgtaagaaagatgcatctacattacatttg 14164623  T
Q  943 tagggcttggactcggtttggtccaatgatcaatctcgccttgcactgacctatttagtactctg 1007  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14164624 tagggcctggactcggtttggtccactgatcaatctcgccttgcactgacctatttagtactctg 14164688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 139 - 395
Target Start/End: Original strand, 14163873 - 14164129
Alignment:
Q  139 gccctttatcatggagcttgcaagagttgaagttgcttcttacttcccatactccacaacagttttaggttacaaattttacggttgtgtttggataaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14163873 gccctttatcatggagcttgcaagagttgaagttgcttcttacttcccatactccacaacagttttaggttacaaattttacggttgtgtttggataaat 14163972  T
Q  239 agcttattatctgattatagcacaaacccttgtgtttcttttttcctaatataacacaaacacttttcatgataatcctcatgtataagcttacataaga 338  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  14163973 agcttattagctgattatagcacaaacccttgtgtttattttttcctaatataacacaaacacttatcatgataatccttatgtataagcttacataaga 14164072  T
Q  339 tatttttatagcataaagttaattgttattgtatgctataagttattttcctaagct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164073 tatttttatagcataaagttaattgttattgtatgctataagttattttcctaagct 14164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 14163751 - 14163846
Alignment:
Q  17 aaatttacacttatgaaggcataaatttgcatgctccatttattcataattactttaactagccttctagcaaactttaaatttatttacacaata 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14163751 aaatttacacttatgaaggcataaatttgcatgctccattgattcataattactttaactagccttctagcaaactttaaatttatttacacaata 14163846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 2735125 - 2735177
Alignment:
Q  431 cttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcaca 483  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||    
T  2735125 cttatgaaaaatgtcataagccgttttcataagttatctcaaacagtctcaca 2735177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 34430536 - 34430449
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgtttt 457  Q
    |||| |||||| | ||||| |||||| ||||||||||||||| |||||||| | ||  || ||||||| |||| ||||||||||||||    
T  34430536 tatgttataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgtttt 34430449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 625 - 691
Target Start/End: Original strand, 13997251 - 13997317
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatc 691  Q
    |||||||| ||| ||||||||| ||||||||| ||| ||||||||| || ||| |||||||||||||    
T  13997251 tagctaaactatgagcaacaccattgacttgtctcctaatgaacttaacatcagagttcactaaatc 13997317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 24915126 - 24915011
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    ||||||||||| | ||||| |||||| |||||||||| || | |||||||||| ||  || |||||||||||| ||||||| |||||| |||| || ||     
T  24915126 tatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagttgttttcataaattgtcc 24915027  T
Q  470 caaacagcctcacaaa 485  Q
    ||||||||||||||||    
T  24915026 caaacagcctcacaaa 24915011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 625 - 691
Target Start/End: Complemental strand, 35322419 - 35322353
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatc 691  Q
    |||||||| ||| ||||||||| ||||||||| ||| |||||||||||| ||| |||||||||||||    
T  35322419 tagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 35322353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 3234090 - 3233975
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    ||||||||||||| ||||  |||||| | |||||||| |||| |||||||||  ||  ||||||||||||| | | ||||| |||||| ||||||| ||     
T  3234090 tatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagttgttttcataagttctcc 3233991  T
Q  470 caaacagcctcacaaa 485  Q
    | ||||| ||||||||    
T  3233990 ctaacagtctcacaaa 3233975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 2295134 - 2295206
Alignment:
Q  413 aaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||||||||| |||  | |||||||||| | |||||||||||||| ||||||| || ||||||| ||||||||    
T  2295134 aaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaa 2295206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 27976511 - 27976558
Alignment:
Q  305 tcatgataa-tcctcatgtataagcttacataagatatttttatagca 351  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  27976511 tcatgataagtccttatgtataagcttacataagctatttttatagca 27976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 485
Target Start/End: Original strand, 49938742 - 49938857
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    |||| |||||||| ||||  |||||| | || ||||| |||| |||||||||| ||  || ||| |||||| | |||||||||||||| ||||||| ||     
T  49938742 tatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcataagttctcc 49938841  T
Q  470 caaacagcctcacaaa 485  Q
    ||||||  ||||||||    
T  49938842 caaacaatctcacaaa 49938857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 42575483 - 42575429
Alignment:
Q  431 cttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||||||||| | ||||||| |||||| |||| || |||||||||||||||||||    
T  42575483 cttatgaaaactgtcataagttgtttttataaattttctcaaacagcctcacaaa 42575429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 473157 - 473253
Alignment:
Q  368 tgtatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagtt 465  Q
    ||||||||||||||| ||||  |||| ||| |||||||| |||| |||||||||| ||  || |||||||||| | | ||||||| |||| |||||||    
T  473157 tgtatgctataagttgtttttataagttctattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgt-ataagcttttttcataagtt 473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 17822940 - 17822853
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgtttt 457  Q
    ||||||||||||| ||||| |||||| |||||||||| |||| |||||||| | ||  || |||||||||||| ||||||||||||||    
T  17822940 tatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgtttt 17822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 55414495 - 55414408
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgtttt 457  Q
    |||||||||| || ||||| |||| | |||||||||| |||| |||||||||| ||  || |||||||||||| ||||||||||||||    
T  55414495 tatgctataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgtttt 55414408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 25904278 - 25904183
Alignment:
Q  390 taagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||||| | |||||||| ||||||||||||| | ||  || ||||||||||||  ||||||||||||| ||||| | || ||||||| ||||||||    
T  25904278 taagctgttttggagaacttataaaaataagctgaaaaaagcttatgaaaaatggcataagctgttttcataagctctcccaaacagtctcacaaa 25904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 50681164 - 50681049
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    ||||||||||||| |||   |||||| | |||||||| |||| ||||||| || ||  || |||||||||| | |||| | ||||||| ||||||| |||    
T  50681164 tatgctataagttgtttatataagctatattggagaaattatgaaaataaattgaaaaaagcttatgaaaattgtcattaactgttttcataagttctct 50681065  T
Q  470 caaacagcctcacaaa 485  Q
    ||||||| ||||||||    
T  50681064 caaacagtctcacaaa 50681049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 625 - 691
Target Start/End: Complemental strand, 6682846 - 6682780
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatc 691  Q
    |||||||| ||| ||||||||| ||||||||| ||| ||||||||| || ||| |||||||||||||    
T  6682846 tagctaaactatgagcaacaccattgacttgtctcctaatgaactttacatcagagttcactaaatc 6682780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 24169279 - 24169373
Alignment:
Q  391 aagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    ||||| |||||||||  |||| |||||||||| ||  || |||||||||||| ||||||||| |||| | ||||| ||||||| || ||||||||    
T  24169279 aagctatcttggagagcttatgaaaataagttgaaaaaatcttatgaaaaatgtcataagctatttttaaaagttctctcaaatagtctcacaaa 24169373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 3070141 - 3070083
Alignment:
Q  291 aacacaaacacttttcatgataatc-ctcatgtataagcttacataagatatttttata 348  Q
    |||||| |||||| ||||||||| | ||||| |||||||||||||||| ||||||||||    
T  3070141 aacacatacacttgtcatgataaacactcatatataagcttacataagttatttttata 3070083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 391 - 485
Target Start/End: Complemental strand, 13126630 - 13126536
Alignment:
Q  391 aagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    ||||| |||| ||||| |||| |||||||| | ||  || ||||||| |||| |||||||||||||| ||||||| |  ||||||| ||||||||    
T  13126630 aagctatcttcgagaacttatgaaaataagctgaaaaaagcttatgataaatgtcataagctgtttttataagttcttccaaacagtctcacaaa 13126536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 2236980 - 2236935
Alignment:
Q  446 ataagctgttttgataagttatctcaaacagcctcacaaacttatg 491  Q
    ||||| |||||| |||||||||||||||||| |||| |||||||||    
T  2236980 ataagttgttttcataagttatctcaaacagtctcataaacttatg 2236935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 21731729 - 21731616
Alignment:
Q  372 tgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctca 471  Q
    ||||||||||| ||||  |||||| | |||||||| |||| ||| |||||| ||  ||  ||||||||| | | |||||||||||| ||||||| || ||    
T  21731729 tgctataagttgtttttataagctatattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataagctgttttcataagttctccca 21731630  T
Q  472 aacagcctcacaaa 485  Q
    ||||  ||||||||    
T  21731629 aacaatctcacaaa 21731616  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 43279615 - 43279487
Alignment:
Q  359 aattgttattgtatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttg 458  Q
    ||||||| |||||||||||||||| ||||  |||||| | |||||||| || | |||||||||| ||  || |||||||||| | ||||||||||||||     
T  43279615 aattgtttttgtatgctataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttc 43279516  T
Q  459 ataagttatct--caaacagcctcacaaa 485  Q
    |||| || |||  ||||||| ||||||||    
T  43279515 ataaattctctcccaaacagtctcacaaa 43279487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 41812123 - 41812055
Alignment:
Q  414 aaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcac 482  Q
    ||||||||| ||  || |||||||||||| |||||||||||||| | ||||| || |||||||||||||    
T  41812123 aaataagttgaaaaaagcttatgaaaaatgtcataagctgttttcaaaagttctcccaaacagcctcac 41812055  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 26423308 - 26423239
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatcagt 694  Q
    |||||| |||||  |||||||  ||| ||||| ||| |||||||||||| ||| ||||||||||||||||    
T  26423308 tagctagattatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcactaaatcagt 26423239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 485
Target Start/End: Original strand, 36534825 - 36534878
Alignment:
Q  432 ttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    ||||||| ||| | |||||||||||| |||||||||| ||||||| ||||||||    
T  36534825 ttatgaacaattttataagctgttttcataagttatcccaaacagtctcacaaa 36534878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 625 - 691
Target Start/End: Original strand, 33305024 - 33305090
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatc 691  Q
    |||||||| ||| ||||||||| ||||||||| ||| |||||||||||| ||| |||||||||||||    
T  33305024 tagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 33305090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 29925838 - 29925951
Alignment:
Q  372 tgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctca 471  Q
    ||||||||||| ||| | |||||| | |||||||| |||| |||||||||| ||  ||||  ||||| | | |||||||||||||| ||||||| || ||    
T  29925838 tgctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctgttttcataagttctccca 29925937  T
Q  472 aacagcctcacaaa 485  Q
    ||| | ||||||||    
T  29925938 aacggtctcacaaa 29925951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 32703353 - 32703301
Alignment:
Q  368 tgtatgctataagttattttcctaagctctcttggagaagttataaaaataag 420  Q
    ||||||||||||||| ||||| |||||| ||| |||||| |||||||||||||    
T  32703353 tgtatgctataagttgttttcataagctatctaggagaatttataaaaataag 32703301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 3932690 - 3932636
Alignment:
Q  431 cttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||||||||| ||||||||||||||||   ||||| |||||||||| ||||||||    
T  3932690 cttatgaaaattatcataagctgtttttgcaagttttctcaaacagtctcacaaa 3932636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 16457993 - 16457939
Alignment:
Q  431 cttatgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||||||||| | |||||||||||||| ||||||| || ||||||| ||||||||    
T  16457993 cttatgaaaactgtcataagctgttttcataagttctcccaaacagtctcacaaa 16457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 625 - 691
Target Start/End: Complemental strand, 31637669 - 31637603
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaatc 691  Q
    |||||||| ||| ||||||||| ||||||||| ||| |||||||||||| ||| |||||||||||||    
T  31637669 tagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatc 31637603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 485
Target Start/End: Original strand, 39980725 - 39980839
Alignment:
Q  371 atgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctc 470  Q
    |||||||||||| ||||  |||||| | |||||||| |||| |||||||||| ||  || |||||||||    |||||||||||||| ||||||| |||     
T  39980725 atgctataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataagttctctt 39980824  T
Q  471 aaacagcctcacaaa 485  Q
    |||||| ||||||||    
T  39980825 aaacagtctcacaaa 39980839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 374 - 485
Target Start/End: Original strand, 22203429 - 22203539
Alignment:
Q  374 ctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaa 473  Q
    ||||||||| ||||| |||||| |||||||||| |||| |||||||  |  || || |||| | ||||| |||||||||||||| ||||||| || ||||    
T  22203429 ctataagttgttttcataagctatcttggagaacttatgaaaataaactgcattaagcttaagtaaaatgtcataagctgttttcataagttctc-caaa 22203527  T
Q  474 cagcctcacaaa 485  Q
    ||| ||||||||    
T  22203528 cagtctcacaaa 22203539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 375 - 485
Target Start/End: Original strand, 21367667 - 21367777
Alignment:
Q  375 tataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctcaaac 474  Q
    |||||||| ||||| |||||| |||||||||| |||| |||||||| | ||   | ||| |||| ||| |||||||||||||| ||||||| || |||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctcccaaac 21367766  T
Q  475 agcctcacaaa 485  Q
    || | ||||||    
T  21367767 agtcccacaaa 21367777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 519
Target Start/End: Original strand, 584042 - 584191
Alignment:
Q  371 atgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctc 470  Q
    ||||||||||||| |||| |||||| ||||| |||| |||| ||| |||| | || ||||| |||||||| |  | ||||||||||| |||| || ||      
T  584042 atgctataagttagtttcataagctatcttgaagaacttatgaaattaagcttaaagaaacctatgaaaactgccgtaagctgttttcataaattctcca 584141  T
Q  471 aaacagcctcaca-aacttatggtaataaatgaattcaaataagtcaatc 519  Q
    |||||| |||||| |||||||| || || || |  |||||||||||||||    
T  584142 aaacagtctcacagaacttatgctagtagataagctcaaataagtcaatc 584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 625 - 690
Target Start/End: Original strand, 6999533 - 6999598
Alignment:
Q  625 tagctaaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaagttcactaaat 690  Q
    |||||||| ||| ||| ||||| ||||||||| ||| |||||||||||| ||| ||||||||||||    
T  6999533 tagctaaactatgagccacaccattgacttgtctcctaatgaacttcacatcagagttcactaaat 6999598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 485
Target Start/End: Complemental strand, 29168132 - 29168017
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    ||||||||||| | ||||||| |||| |||||||||| ||||  ||||||| | |   | | ||||||||||| |||||| ||||||| ||||||| ||     
T  29168132 tatgctataagctgttttcctgagctatcttggagaacttatggaaataagctgagaaacatttatgaaaaatgtcataatctgtttttataagttctcc 29168033  T
Q  470 caaacagcctcacaaa 485  Q
    ||||||| ||||||||    
T  29168032 caaacagtctcacaaa 29168017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 29205803 - 29205908
Alignment:
Q  370 tatgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatct 469  Q
    ||||||||||||||||||| ||| || | |||||||| |||| ||| || ||| ||  || |||||||||||| ||||| |||||||| ||||||| |||    
T  29205803 tatgctataagttattttcataaactattttggagaatttatgaaagtaggttaaaa-aagcttatgaaaaatgtcatacgctgttttaataagttctct 29205901  T
Q  470 caaacag 476  Q
    || ||||    
T  29205902 cagacag 29205908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 457
Target Start/End: Complemental strand, 31716282 - 31716215
Alignment:
Q  390 taagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgtttt 457  Q
    |||||| |||||||||||||||| ||||||| | ||  || |||||||| ||| ||||||||||||||    
T  31716282 taagctatcttggagaagttatagaaataagctgaaaaaagcttatgaagaatgtcataagctgtttt 31716215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 42622891 - 42622936
Alignment:
Q  375 tataagttattttcctaagctctcttggagaagttataaaaataag 420  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||    
T  42622891 tataagttgtttttctaagctatcttggagaatttataaaaataag 42622936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 629 - 694
Target Start/End: Original strand, 19345 - 19411
Alignment:
Q  629 taaattataagcaacaccgttgacttgtgtccgaatgaacttcacgtcaaag-ttcactaaatcagt 694  Q
    |||| ||||||||||||| ||||||||| ||| |||||||||||| ||| || ||||||||||||||    
T  19345 taaactataagcaacaccattgacttgtctcctaatgaacttcacatcagagtttcactaaatcagt 19411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 485
Target Start/End: Complemental strand, 19022659 - 19022545
Alignment:
Q  371 atgctataagttattttcctaagctctcttggagaagttataaaaataagttcaatgaaacttatgaaaaatatcataagctgttttgataagttatctc 470  Q
    |||||||||||| ||||  |||||| | |||||||| |||| |||||||||| ||   |||||||||||| | ||||||| |||||| |||| || || |    
T  19022659 atgctataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttgttttcataaattctccc 19022560  T
Q  471 aaacagcctcacaaa 485  Q
    |||||  ||||||||    
T  19022559 aaacaatctcacaaa 19022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 46078051 - 46078108
Alignment:
Q  293 cacaaacacttttcatgataatc-ctcatgtataagcttacataagatatttttatag 349  Q
    ||||||||| | ||||||||| | || ||||||||||||||||||| |||||||||||    
T  46078051 cacaaacacatatcatgataagcgcttatgtataagcttacataagttatttttatag 46078108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 24681 - 24731
Alignment:
Q  435 tgaaaaatatcataagctgttttgataagttatctcaaacagcctcacaaa 485  Q
    |||| ||| |||||||||||||||||||||| || ||||||| ||||||||    
T  24681 tgaagaatgtcataagctgttttgataagttctcccaaacagtctcacaaa 24731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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