View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_21 (Length: 519)
Name: NF7863_low_21
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_21 |
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| [»] scaffold1300 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 10981116 - 10981409
Alignment:
| Q |
18 |
tgttttggggtcgttcactacatactagtgttgttttttcgggtggtcttgtttggctttatttt-gggccactagagatttcttgctcattgcgatttt |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10981116 |
tgttttggggctgttcactacatactagtgttgttttttcaggtggtcttggttggctttatttttgggccactagagatttcttgctcattgcgatttt |
10981215 |
T |
|
| Q |
117 |
ttgcttggagtttgtatttagtctttgtttgtattcgattgaaagaattcaatttgaacttgtaattnnnnnnnttcaatctgaactaacggnnnnnnnn |
216 |
Q |
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| T |
10981216 |
ttgcttggagtttgtatttagtctttgtttgtattcgattgaaagaattcaatttgaacttgtaattaaaaaaattcaatctgaactaacggaaaaaaaa |
10981315 |
T |
|
| Q |
217 |
ngtaacgttaaggctatttgtgataaagagaaaaagaacaatgagcatcatatgnnnnnnnnnn--gttttgacgaataagaatcatatgttttt |
309 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10981316 |
attaacgttaagactatt-gtgataaagaggaaaagaacaatgagcatcatatgttttttgtttttgttttgacgaataagaatcatatgttttt |
10981409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 368 - 506
Target Start/End: Original strand, 10981409 - 10981547
Alignment:
| Q |
368 |
ttaataatgattcttaaaaattgatgtccctaatgtcttacaaaaacttacacaatcattattgatgttgcactttcaattttggttcaatcaaatgcaa |
467 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10981409 |
ttaataatgattcttaaaaattgatgtcccatatgtcttacaaaaacttacacaatcattattgatgttgcactttcaattttggttcaatcaaatgcaa |
10981508 |
T |
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| Q |
468 |
actgtggagtaacttaagaaagtcagcaaattttgatgt |
506 |
Q |
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| T |
10981509 |
attgtggagtaacttaagaaagtcagcaaattttgatgt |
10981547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 368 - 506
Target Start/End: Complemental strand, 18760244 - 18760106
Alignment:
| Q |
368 |
ttaataatgattcttaaaaattgatgtccctaatgtcttacaaaaacttacacaatcattattgatgttgcactttcaattttggttcaatcaaatgcaa |
467 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18760244 |
ttaataatgattcttaaaaattgatgtcccatatgtcttacaaaaacttacacaatcattattgatgttgcactttcaattttggttcaatcaaatgcaa |
18760145 |
T |
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| Q |
468 |
actgtggagtaacttaagaaagtcagcaaattttgatgt |
506 |
Q |
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| T |
18760144 |
attgtggagtaacttaagaaagtcagcaaattttgatgt |
18760106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 8521013 - 8520879
Alignment:
| Q |
17 |
atgttttggggtcgttcactacatactagtgttgttttttcgggtggtcttgtttggctttattttgggccactagagatttcttgctcattgcgatttt |
116 |
Q |
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|||||||| ||| ||||||||| ||||||||||||| ||| ||||| ||||||||| |||| ||||| |||||| ||||||||||||||||| ||| | |
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| T |
8521013 |
atgttttgcggttgttcactacgtactagtgttgttgtttggggtgctcttgtttgtctttgttttgagccacttgagatttcttgctcattagcattct |
8520914 |
T |
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| Q |
117 |
ttgcttggagtttgtatttagtctttgtttgtatt |
151 |
Q |
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||| || || ||||||||| || ||||||| |||| |
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| T |
8520913 |
ttgtttagaatttgtattttgtgtttgtttctatt |
8520879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 483
Target Start/End: Complemental strand, 8520666 - 8520481
Alignment:
| Q |
297 |
atcatatgtttttgtatgatatatgataccatcaatagcatacatatcatcatgcataaactaca----aagtacttaataatgattcttaaaaattgat |
392 |
Q |
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||||| |||| |||||||||||||| |||| ||||| ||||| |||| ||| ||||||| | ||| || || ||||||||||||||||||||||||| |
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| T |
8520666 |
atcatgtgttattgtatgatatatggtaccctcaattgcatatatatgatcctgcataagccacacataaaatatttaataatgattcttaaaaattgat |
8520567 |
T |
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| Q |
393 |
gtccctaatgtcttacaaaaacttacacaatcattattgatgttgcactttcaattttggttcaatcaaatgcaaactgtggagtaactta |
483 |
Q |
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| T |
8520566 |
gcccctgatggcttacaaaacgtt-cacagtcattattta----gcactttaaattctcgttcaatgaaatgcaaactgtgaagtaactta |
8520481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 18760272 - 18760244
Alignment:
| Q |
281 |
gttttgacgaataagaatcatatgttttt |
309 |
Q |
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| T |
18760272 |
gttttgacgaataagaatcatatgttttt |
18760244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1300 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1300
Description:
Target: scaffold1300; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 316 - 182
Alignment:
| Q |
17 |
atgttttggggtcgttcactacatactagtgttgttttttcgggtggtcttgtttggctttattttgggccactagagatttcttgctcattgcgatttt |
116 |
Q |
| |
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|||||||| || ||||||||| ||||||||||||| ||| ||||| ||||||||| |||| ||||| |||||| |||||||||||||||||| ||| | |
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| T |
316 |
atgttttgcggctgttcactacgtactagtgttgttgtttggggtgctcttgtttgtctttgttttgagccacttgagatttcttgctcattggcattct |
217 |
T |
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| Q |
117 |
ttgcttggagtttgtatttagtctttgtttgtatt |
151 |
Q |
| |
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||| || || ||||||||| || ||||||| |||| |
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| T |
216 |
ttgtttagaatttgtattttgtgtttgtttctatt |
182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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