View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_23 (Length: 512)
Name: NF7863_low_23
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 380018 - 379679
Alignment:
| Q |
15 |
tggacatcaatgaatactccctccatgcacataaaacatttcaaagtcgaatattttgatgcaatcaggactatttttgtgacaatgcatctaaatgaga |
114 |
Q |
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| T |
380018 |
tggaaatcaatgaatactccctccatgcacataaaacattttaaagtcgaatattttgatgcaatcgggactatttttgtgacaatgcatctaaatgaga |
379919 |
T |
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| Q |
115 |
actgagtaatttcaaaagacacccttttagcgtatctaccaagtaaccaggaaaatagtcaaatggatttgaacatatttacctgacctccatgagttct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
379918 |
actgagtaatttcaaaagacacccttttagcgtatctaccaagtaaccaggaaaatattcaaaaggatttgaacatattt-----acctccatgagttct |
379824 |
T |
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| Q |
215 |
acttttgcagaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccgtttccgcttctttgatggactatttcttgtcaaatact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
379823 |
acttttgcagaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccgtttccgcttcttcgatggactatttcttgtcaaatact |
379724 |
T |
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| Q |
315 |
ggcactcaggactatttcttcaacacagggaattccaccagatcc |
359 |
Q |
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| T |
379723 |
ggcactcaggactatttcttcaacacagggaattccaccagatcc |
379679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 356 - 495
Target Start/End: Complemental strand, 379648 - 379509
Alignment:
| Q |
356 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcagattccttatcatttccaacattctcaagcaatataagttagctttcaaat |
455 |
Q |
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| T |
379648 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcagattccttatcatttccaacattctcaagcaatataagttagctttcaaat |
379549 |
T |
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| Q |
456 |
ccaattggtttcacaccaaaatgattcaatgcacgttttt |
495 |
Q |
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| T |
379548 |
ccaattggtttcacaccaaaatgattcaatgcatgttttt |
379509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 6298756 - 6298680
Alignment:
| Q |
200 |
acctccatgagttctacttttgcagaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccg |
276 |
Q |
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| T |
6298756 |
acctccatgagttctacttttgcagaatcaacaccttgaacatcttcaaatccaactgtctgactcttaggtttccg |
6298680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 6305566 - 6305490
Alignment:
| Q |
200 |
acctccatgagttctacttttgcagaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccg |
276 |
Q |
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| T |
6305566 |
acctccatgagttctacttttgcagaatcaacaccttgaacatcttcaaatccaactgtctgactcttaggtttccg |
6305490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 6299301 - 6299225
Alignment:
| Q |
35 |
ctccatgcacataaaacatttcaaagtcgaatattttgatgcaatcaggactatttttgtgacaatgcatctaaatg |
111 |
Q |
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| T |
6299301 |
ctccatgcatatcaaacatttcaaagtctaatattttgatgcaatcagggttatttttgtgacaatgcatctaaatg |
6299225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 6306111 - 6306035
Alignment:
| Q |
35 |
ctccatgcacataaaacatttcaaagtcgaatattttgatgcaatcaggactatttttgtgacaatgcatctaaatg |
111 |
Q |
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| T |
6306111 |
ctccatgcatatcaaacatttcaaagtctaatattttgatgcaatcagggttatttttgtgacaatgcatctaaatg |
6306035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 6298367 - 6298317
Alignment:
| Q |
356 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcaga |
406 |
Q |
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| T |
6298367 |
atccttatccatcgaaacatctactacttgttgtgattcttcttcatcaga |
6298317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 6305177 - 6305127
Alignment:
| Q |
356 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcaga |
406 |
Q |
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| T |
6305177 |
atccttatccatcgaaacatctactacttgttgtgattcttcttcatcaga |
6305127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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